RNA id: TU844612



Basic Information


Item Value
RNA id TU844612
length 706
lncRNA type antisense_over
GC content 0.36
exon number 1
gene id G744006
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 72239287 ~ 72239992 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CCATGgccttcagccaatcagaattcagggctcaaacctcCCACTTTATAAATGTGGATATAGAGTAGTGGGGGAGGGAACTGTAGGGTCAAAGTGTATACATGTGGATATACAGTAGCGGAGTGCAATTGAGTTCTTGACTCCCATCAACCTAAACTGCCATATTCACAGAATTACATGTGAGTATAGTGTAAATAGCTGTCTAATGTTATTACCTCTGATAGGCATTCTACTGAAATGTTAACTCTATGGTCCTGAATCCTCATACAGTATGTTGTCCCTCACCTATAGTATATATCCAGTTTCTATGTGTTTACCACtaaatacaatataaatcatTCTACATTTTCAACATCCCTTAACATTTTCAACAGTCTGTACAAATATCAAATTATAGTTCTAATACATTTACATGACCTTTGATGCTATTTTAGCTCACAGCTAGAATGTATTTTATTATCATTGTAAACATTGTGACTTCTATGCAaatgcatacatactgtatatacaaaaagaGCAGCAAAACACTGGACTATATAAAACATAACAGTTGTGTACTATTCAGTTCTGGTGTTCCTTCATACCGTCCGTCTCTTCATAAGTCTCCCTGGGAATTCTCCTGTGGAATTTGAGAATCCCTAGGAGTTCCTCATCTAATTAACAttccgtatttttttttttactgttttctgcACCCTGAGTTTTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU844453 lncRNA upstream 28451 72210503 ~ 72210836 (+) True G743860
TU844452 lncRNA upstream 29450 72209637 ~ 72209837 (+) True G743859
TU844445 lncRNA upstream 37986 72201085 ~ 72201301 (+) True G743852
TU844436 lncRNA upstream 52240 72186764 ~ 72187047 (+) True G743843
TU844408 lncRNA upstream 83878 72151486 ~ 72155409 (+) True LOC110530494
TU844623 lncRNA downstream 11720 72251712 ~ 72252029 (+) True G744017
TU844735 lncRNA downstream 84175 72324167 ~ 72324901 (+) True G744128
TU844757 lncRNA downstream 110848 72350840 ~ 72351733 (+) False G744148
TU844756 lncRNA downstream 110964 72350956 ~ 72352580 (+) False G744148
TU844758 lncRNA downstream 112182 72352174 ~ 72353262 (+) True G744148
XM_021611273.2 mRNA upstream 19840 72191167 ~ 72219447 (+) True LOC110529137
XM_021613631.2 mRNA upstream 83857 72146353 ~ 72155430 (+) False LOC110530494
XM_021613633.2 mRNA upstream 83857 72151314 ~ 72155430 (+) False LOC110530494
XM_036986151.1 mRNA upstream 83857 72151910 ~ 72155430 (+) False LOC110530494
XM_036986150.1 mRNA upstream 136767 72097392 ~ 72102520 (+) False LOC110530489
XM_021613635.2 mRNA downstream 101504 72341496 ~ 72345654 (+) True LOC110530496
XM_021613638.2 mRNA downstream 254053 72494045 ~ 72496970 (+) True LOC110530498
XR_005053035.1 mRNA downstream 261317 72501309 ~ 72501364 (+) True LOC118965654
XM_021613639.2 mRNA downstream 267706 72507698 ~ 72510508 (+) False LOC110530499
LOC110530976 mRNA downstream 302063 72542055 ~ 72555285 (+) False LOC110530976
TU843344 other upstream 523671 71704643 ~ 71715616 (+) False G742860
TU843351 other upstream 523671 71704643 ~ 71715616 (+) False G742860
TU843343 other upstream 523671 71713728 ~ 71715616 (+) True G742860
TU843350 other upstream 532745 71695602 ~ 71706542 (+) False G742860
TU842479 other upstream 1612543 70626221 ~ 70626744 (+) True G742095
TU844903 other downstream 302734 72542726 ~ 72555556 (+) False LOC110530976
TU844905 other downstream 302734 72542726 ~ 72555556 (+) False LOC110530976
TU844912 other downstream 302734 72542726 ~ 72555556 (+) False LOC110530976
TU844909 other downstream 311384 72551376 ~ 72555556 (+) True LOC110530976
TU844866 other downstream 394892 72634884 ~ 72642738 (+) True LOC110530502

Expression Profile