RNA id: TU844757



Basic Information


Item Value
RNA id TU844757
length 894
lncRNA type antisense_over
GC content 0.33
exon number 1
gene id G744148
representative False

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 72350840 ~ 72353262 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


aaaaacatatttacgTCATAACATTTGTACAATTACTAATTACAATATACAACAAACTTTAAAAGAGTTTATGTACATTACAACGAAACATTTTGGTTATACATGTTTTATCGCACTCTTTGATGATATATTCTTATTTTTAGACCTTCTCAAACTAGAACCCCTAAATCTGAGTAAAACTTCTCCAAAATAAACATTCAACTTGGAGGCACCTCCCAAACATAAATAACAAAATGATGTTCAACCAACAGTGTTTAGTGGTTTAGGACCAGAAAATAGCAAAATATTGACCGTTATTTACGTATTTATATAGATCTCGGGACTGTTTGCTTGAATACTTTGATTCAAGAGATTTCTTGTGCATATGGACTTAGTCACAATTatgaaaatatacattttgtatGAAAATATCACAGAGAACTGCTACATAGACAACTGTTCCAGAAAATTAGGCCTAGAGCAATCAAGGGATGTAAACTCTAATGGTCATGACAGGTCAATCATGTTCACAGCAATTATCAAACGATACCTTCCCCTACAAGCAATTTTAGACCATTTGTCAAGTAATTTTAATTAACTTTGTACAACATAAATGTGGTTAGAGTACAATTTCAATTGCAAGAGAATGTGTAAAGCAATAATTACTTCTGATGTAGTCACAGCCATATCTAAGCCCTTTTCACAACAGCAAACCTCAACAGATGTGATATTGTTTTATTGGAGCGGTCTTCCTTActactccaaacataacaaaaATAATGAGAAAGATTGTTGCCATAATCATTATCTTCATGGCAACTAGTCAGGTAACAAGCATGTATCATTGATACCAAAGAAGTTTGCTTTTGAACCCAAATCAGAGAAATACCTCCACACCAGATTAGTGAGTTTGTC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU844735 lncRNA upstream 25939 72324167 ~ 72324901 (+) True G744128
TU844623 lncRNA upstream 98811 72251712 ~ 72252029 (+) True G744017
TU844612 lncRNA upstream 110848 72239287 ~ 72239992 (+) True G744006
TU844453 lncRNA upstream 140004 72210503 ~ 72210836 (+) True G743860
TU844452 lncRNA upstream 141003 72209637 ~ 72209837 (+) True G743859
TU844758 lncRNA downstream 441 72352174 ~ 72353262 (+) True G744148
TU844759 lncRNA downstream 3080 72354813 ~ 72355257 (+) True G744149
TU844762 lncRNA downstream 5426 72357159 ~ 72357436 (+) True G744152
TU844875 lncRNA downstream 155965 72507698 ~ 72509841 (+) True LOC110530499
TU844876 lncRNA downstream 159653 72511386 ~ 72511590 (+) True G744264
XM_021613635.2 mRNA upstream 5186 72341496 ~ 72345654 (+) True LOC110530496
XM_021611273.2 mRNA upstream 131393 72191167 ~ 72219447 (+) True LOC110529137
XM_021613631.2 mRNA upstream 195410 72146353 ~ 72155430 (+) False LOC110530494
XM_021613633.2 mRNA upstream 195410 72151314 ~ 72155430 (+) False LOC110530494
XM_036986151.1 mRNA upstream 195410 72151910 ~ 72155430 (+) False LOC110530494
XM_021613638.2 mRNA downstream 142312 72494045 ~ 72496970 (+) True LOC110530498
XR_005053035.1 mRNA downstream 149576 72501309 ~ 72501364 (+) True LOC118965654
XM_021613639.2 mRNA downstream 155965 72507698 ~ 72510508 (+) False LOC110530499
LOC110530976 mRNA downstream 190322 72542055 ~ 72555285 (+) False LOC110530976
XM_036986152.1 mRNA downstream 282505 72634238 ~ 72714065 (+) False LOC110530502
TU843344 other upstream 635224 71704643 ~ 71715616 (+) False G742860
TU843351 other upstream 635224 71704643 ~ 71715616 (+) False G742860
TU843343 other upstream 635224 71713728 ~ 71715616 (+) True G742860
TU843350 other upstream 644298 71695602 ~ 71706542 (+) False G742860
TU842479 other upstream 1724096 70626221 ~ 70626744 (+) True G742095
TU844903 other downstream 190993 72542726 ~ 72555556 (+) False LOC110530976
TU844905 other downstream 190993 72542726 ~ 72555556 (+) False LOC110530976
TU844912 other downstream 190993 72542726 ~ 72555556 (+) False LOC110530976
TU844909 other downstream 199643 72551376 ~ 72555556 (+) True LOC110530976
TU844866 other downstream 283151 72634884 ~ 72642738 (+) True LOC110530502

Expression Profile