RNA id: TU844756


Basic Information

Item Value
RNA id TU844756
length 1625
lncRNA type antisense_over
GC content 0.36
exon number 1
gene id G744148
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 72350840 ~ 72353262 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTTTGATGATATATTCTTATTTTTAGACCTTCTCAAACTAGAACCCCTAAATCTGAGTAAAACTTCTCCAAAATAAACATTCAACTTGGAGGCACCTCCCAAACATAAATAACAAAATGATGTTCAACCAACAGTGTTTAGTGGTTTAGGACCAGAAAATAGCAAAATATTGACCGTTATTTACGTATTTATATAGATCTCGGGACTGTTTGCTTGAATACTTTGATTCAAGAGATTTCTTGTGCATATGGACTTAGTCACAATTatgaaaatatacattttgtatGAAAATATCACAGAGAACTGCTACATAGACAACTGTTCCAGAAAATTAGGCCTAGAGCAATCAAGGGATGTAAACTCTAATGGTCATGACAGGTCAATCATGTTCACAGCAATTATCAAACGATACCTTCCCCTACAAGCAATTTTAGACCATTTGTCAAGTAATTTTAATTAACTTTGTACAACATAAATGTGGTTAGAGTACAATTTCAATTGCAAGAGAATGTGTAAAGCAATAATTACTTCTGATGTAGTCACAGCCATATCTAAGCCCTTTTCACAACAGCAAACCTCAACAGATGTGATATTGTTTTATTGGAGCGGTCTTCCTTActactccaaacataacaaaaATAATGAGAAAGATTGTTGCCATAATCATTATCTTCATGGCAACTAGTCAGGTAACAAGCATGTATCATTGATACCAAAGAAGTTTGCTTTTGAACCCAAATCAGAGAAATACCTCCACACCAGATTAGTGAGTTTGTCCCCAACATGCCATCTATTTACACAATTTCTACAATTCCAAATCCCAAGTTAATTCCATGGGTGCATGAGTTCTACTGTTCTATTTCCCAGAACTGCTTACTGAAGCTTGAATAACCAGGCTTGCCTAAGTGCCTGGAACTTGTATGGCACTGCAATGGGcctggagggagaggtggataaCACCCATGCAGGTCAGATGGTCGGTCAGTCACTACCGGGGCAGGTCTTGGCATGTTGACCTGAGCAGGGCAAAGCATTAAGGAAGCCAAATGGAACTCTAACTCATCaggctctatctctctctggctcctgGACACAACAGCTTAGCATTGACAATGATTAAGTGCAGCACATTGGGATTTGAAAGAGAGAAAATAATTCAATAATTTTAATACATTAAAATGATTTAATGTACTGTACCTTAAAATGTATCTTGACTTGGGACAGCTGTGGCATTATGCGGACTGAAATAAGGGTCTGCGACACTAaaatagtgtttgtgtttagttttTGAAATAAGTGTCATATAAATGTATCTGAATCACAGTCCCATCTCCATTATTTGCATTAGATAATGGATATAATCTGAACTCGAACCCAGTGAAAGATAGCTTTGATTTATTTAGAGTAGCCTTAGGGTTTTTTATACAGAAGTGAGAAAAACACATCATTGACGTTATGCTGTTCAAAAGAGTTTGAGAGTGATTGGCAAGGAACAATCTGAAAATAAATTAGCCTTAAGACATTTATACAAATGAAAAGCTCTTAGGGTGACATTTTGACAACTCATAAAAGTAGTGCTGATGACAAACCAAAGAGTATCACTTCCTTATTTAACAGTATAATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU844735 lncRNA upstream 26055 72324167 ~ 72324901 (+) True G744128
TU844623 lncRNA upstream 98927 72251712 ~ 72252029 (+) True G744017
TU844612 lncRNA upstream 110964 72239287 ~ 72239992 (+) True G744006
TU844453 lncRNA upstream 140120 72210503 ~ 72210836 (+) True G743860
TU844452 lncRNA upstream 141119 72209637 ~ 72209837 (+) True G743859
TU844759 lncRNA downstream 2233 72354813 ~ 72355257 (+) True G744149
TU844762 lncRNA downstream 4579 72357159 ~ 72357436 (+) True G744152
TU844875 lncRNA downstream 155118 72507698 ~ 72509841 (+) True LOC110530499
TU844876 lncRNA downstream 158806 72511386 ~ 72511590 (+) True G744264
TU844879 lncRNA downstream 160286 72512866 ~ 72513246 (+) True G744267
XM_021613635.2 mRNA upstream 5302 72341496 ~ 72345654 (+) True LOC110530496
XM_021611273.2 mRNA upstream 131509 72191167 ~ 72219447 (+) True LOC110529137
XM_021613631.2 mRNA upstream 195526 72146353 ~ 72155430 (+) False LOC110530494
XM_021613638.2 mRNA downstream 141465 72494045 ~ 72496970 (+) True LOC110530498
XR_005053035.1 mRNA downstream 148729 72501309 ~ 72501364 (+) True LOC118965654
XM_021613639.2 mRNA downstream 155118 72507698 ~ 72510508 (+) False LOC110530499
LOC110530976 mRNA downstream 189475 72542055 ~ 72555285 (+) False LOC110530976
XM_036986152.1 mRNA downstream 281658 72634238 ~ 72714065 (+) False LOC110530502
TU843344 other upstream 635340 71704643 ~ 71715616 (+) False G742860
TU843351 other upstream 635340 71704643 ~ 71715616 (+) False G742860
TU843343 other upstream 635340 71713728 ~ 71715616 (+) True G742860
TU843350 other upstream 644414 71695602 ~ 71706542 (+) False G742860
TU842479 other upstream 1724212 70626221 ~ 70626744 (+) True G742095
TU844903 other downstream 190146 72542726 ~ 72555556 (+) False LOC110530976
TU844905 other downstream 190146 72542726 ~ 72555556 (+) False LOC110530976
TU844912 other downstream 190146 72542726 ~ 72555556 (+) False LOC110530976
TU844909 other downstream 198796 72551376 ~ 72555556 (+) True LOC110530976
TU844866 other downstream 282304 72634884 ~ 72642738 (+) True LOC110530502

Expression Profile