RNA id: TU844758



Basic Information


Item Value
RNA id TU844758
length 1089
lncRNA type antisense_over
GC content 0.39
exon number 1
gene id G744148
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 72350840 ~ 72353262 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GGGACAGCTGTGGCATTATGCGGACTGAAATAAGGGTCTGCGACACTAaaatagtgtttgtgtttagttttTGAAATAAGTGTCATATAAATGTATCTGAATCACAGTCCCATCTCCATTATTTGCATTAGATAATGGATATAATCTGAACTCGAACCCAGTGAAAGATAGCTTTGATTTATTTAGAGTAGCCTTAGGGTTTTTTATACAGAAGTGAGAAAAACACATCATTGACGTTATGCTGTTCAAAAGAGTTTGAGAGTGATTGGCAAGGAACAATCTGAAAATAAATTAGCCTTAAGACATTTATACAAATGAAAAGCTCTTAGGGTGACATTTTGACAACTCATAAAAGTAGTGCTGATGACAAACCAAAGAGTATCACTTCCTTATTTAACAGTATAATTATTACATCTTTCTAATCTCATCTCAAACTTGGTGTGCAACAGACACAGAATGCAATTGCATCCCGTGCCTGCACTGTTAAAGCACAATCCTGCTTAAATTATCTCTGCCCTCTCATAGATATCAAATAATGAAGGGTTATGGATATAAATACcactagtacagtacagtgctggGAGTGATTAGGGTCTCTTTTGACACTAACACTGATTTTGTTTTGCCTCATCAGCATCCAGCACGGGGCCTTGAAAGGTCAACCTTCCTGACCTATTAAAATATAACCTGATGTACTATAGTATGATAACAGCTCTTGATGCAATGGCAGTACAACTTAGACTCTGCAATTACTTCACAATGTTCATTTGGAGAGGCAACCTTGCCCATCTGTTTTGAATGGTCCTGACTTCTGTGTTACGTCCTAGGACGTCATGTTACGGTATTATAATCTGGAAATCCTAATGGTCTCTTTCTCAAagtgctctgtctctgtctttatgcagaagggaaaataaataaagcaAATGGACAACATTTATGGAGAGATGCCTTAAGACAAGTGTCTTCCCTAGAAAAGGGACGTTTCCAAAGGCGACCTTTGAACTTGGTGATCTAGGTCAAACAGCTGTTGTCTGTTTTATACTGTGGAAGCTGATCCTGGTGGGTGACGTGGGGATGGACATGGCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU844757 lncRNA upstream 441 72350840 ~ 72351733 (+) False G744148
TU844735 lncRNA upstream 27273 72324167 ~ 72324901 (+) True G744128
TU844623 lncRNA upstream 100145 72251712 ~ 72252029 (+) True G744017
TU844612 lncRNA upstream 112182 72239287 ~ 72239992 (+) True G744006
TU844453 lncRNA upstream 141338 72210503 ~ 72210836 (+) True G743860
TU844759 lncRNA downstream 1551 72354813 ~ 72355257 (+) True G744149
TU844762 lncRNA downstream 3897 72357159 ~ 72357436 (+) True G744152
TU844875 lncRNA downstream 154436 72507698 ~ 72509841 (+) True LOC110530499
TU844876 lncRNA downstream 158124 72511386 ~ 72511590 (+) True G744264
TU844879 lncRNA downstream 159604 72512866 ~ 72513246 (+) True G744267
XM_021613635.2 mRNA upstream 6520 72341496 ~ 72345654 (+) True LOC110530496
XM_021611273.2 mRNA upstream 132727 72191167 ~ 72219447 (+) True LOC110529137
XM_021613631.2 mRNA upstream 196744 72146353 ~ 72155430 (+) False LOC110530494
XM_021613638.2 mRNA downstream 140783 72494045 ~ 72496970 (+) True LOC110530498
XR_005053035.1 mRNA downstream 148047 72501309 ~ 72501364 (+) True LOC118965654
XM_021613639.2 mRNA downstream 154436 72507698 ~ 72510508 (+) False LOC110530499
LOC110530976 mRNA downstream 188793 72542055 ~ 72555285 (+) False LOC110530976
XM_036986152.1 mRNA downstream 280976 72634238 ~ 72714065 (+) False LOC110530502
TU843344 other upstream 636558 71704643 ~ 71715616 (+) False G742860
TU843351 other upstream 636558 71704643 ~ 71715616 (+) False G742860
TU843343 other upstream 636558 71713728 ~ 71715616 (+) True G742860
TU843350 other upstream 645632 71695602 ~ 71706542 (+) False G742860
TU842479 other upstream 1725430 70626221 ~ 70626744 (+) True G742095
TU844903 other downstream 189464 72542726 ~ 72555556 (+) False LOC110530976
TU844905 other downstream 189464 72542726 ~ 72555556 (+) False LOC110530976
TU844912 other downstream 189464 72542726 ~ 72555556 (+) False LOC110530976
TU844909 other downstream 198114 72551376 ~ 72555556 (+) True LOC110530976
TU844866 other downstream 281622 72634884 ~ 72642738 (+) True LOC110530502

Expression Profile