RNA id: TU844762



Basic Information


Item Value
RNA id TU844762
length 278
lncRNA type intronic
GC content 0.44
exon number 1
gene id G744152
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 72357159 ~ 72357436 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gaagcaagtccccgcagcaacgttccaacatatagtggaaagccttcccagaagagtggaggctgttgtagcagcaaaggggggaccaactccatattaatgcccatgattttggaatgagatgtttgacgaacagacttttggtcatgtagtgtacttccTGTAAGTGATTGGATTAGGTTGTGTTTTTATCCTCCCCTGACGGTCTTCAATGCACCAGCATCAGAGGGAAAAACAAAATGGAACCTAGACAAGTAGGTTATGTGGTGATAATATTC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU844759 lncRNA upstream 1902 72354813 ~ 72355257 (+) True G744149
TU844758 lncRNA upstream 3897 72352174 ~ 72353262 (+) True G744148
TU844756 lncRNA upstream 4579 72350956 ~ 72352580 (+) False G744148
TU844757 lncRNA upstream 5426 72350840 ~ 72351733 (+) False G744148
TU844735 lncRNA upstream 32258 72324167 ~ 72324901 (+) True G744128
TU844875 lncRNA downstream 150262 72507698 ~ 72509841 (+) True LOC110530499
TU844876 lncRNA downstream 153950 72511386 ~ 72511590 (+) True G744264
TU844879 lncRNA downstream 155430 72512866 ~ 72513246 (+) True G744267
TU844904 lncRNA downstream 193940 72551376 ~ 72555556 (+) False LOC110530976
TU845270 lncRNA downstream 372272 72729708 ~ 72730086 (+) True G744625
XM_021613635.2 mRNA upstream 11505 72341496 ~ 72345654 (+) True LOC110530496
XM_021611273.2 mRNA upstream 137712 72191167 ~ 72219447 (+) True LOC110529137
XM_021613631.2 mRNA upstream 201729 72146353 ~ 72155430 (+) False LOC110530494
XM_021613638.2 mRNA downstream 136609 72494045 ~ 72496970 (+) True LOC110530498
XR_005053035.1 mRNA downstream 143873 72501309 ~ 72501364 (+) True LOC118965654
XM_021613639.2 mRNA downstream 150262 72507698 ~ 72510508 (+) False LOC110530499
LOC110530976 mRNA downstream 184619 72542055 ~ 72555285 (+) False LOC110530976
XM_036986152.1 mRNA downstream 276802 72634238 ~ 72714065 (+) False LOC110530502
TU843344 other upstream 641543 71704643 ~ 71715616 (+) False G742860
TU843351 other upstream 641543 71704643 ~ 71715616 (+) False G742860
TU843343 other upstream 641543 71713728 ~ 71715616 (+) True G742860
TU843350 other upstream 650617 71695602 ~ 71706542 (+) False G742860
TU842479 other upstream 1730415 70626221 ~ 70626744 (+) True G742095
TU844903 other downstream 185290 72542726 ~ 72555556 (+) False LOC110530976
TU844905 other downstream 185290 72542726 ~ 72555556 (+) False LOC110530976
TU844912 other downstream 185290 72542726 ~ 72555556 (+) False LOC110530976
TU844909 other downstream 193940 72551376 ~ 72555556 (+) True LOC110530976
TU844866 other downstream 277448 72634884 ~ 72642738 (+) True LOC110530502

Expression Profile