RNA id: TU844879



Basic Information


Item Value
RNA id TU844879
length 381
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G744267
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 72512866 ~ 72513246 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ccctttgttatgagactctacatagagctcaggtgaatcctgtttccattgatcatctttgagatgtttctacaacttgattggagtccacttgtggtaaattcaattgattggacatgatttggaaaggcacacacctgtctattcaaggtcccacagtttaaagtgcatgtcagagaaaaaaaaacaagccatgaggtagaaggaattgtccgtagagctcagagacaggattgtgtggagaCACAGATCtagtgaagggtaccaaaaaacttctgcagcattgaaggtccccaagaacacagtggccttcatcattcttaaatggaagaagtttggaaccaccaagactcttcccagagtTGGCCacccgggccaaac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU844876 lncRNA upstream 1276 72511386 ~ 72511590 (+) True G744264
TU844875 lncRNA upstream 3025 72507698 ~ 72509841 (+) True LOC110530499
TU844762 lncRNA upstream 155430 72357159 ~ 72357436 (+) True G744152
TU844759 lncRNA upstream 157609 72354813 ~ 72355257 (+) True G744149
TU844758 lncRNA upstream 159604 72352174 ~ 72353262 (+) True G744148
TU844904 lncRNA downstream 38130 72551376 ~ 72555556 (+) False LOC110530976
TU845270 lncRNA downstream 216462 72729708 ~ 72730086 (+) True G744625
TU845321 lncRNA downstream 284495 72797741 ~ 72798967 (+) True G744668
TU845353 lncRNA downstream 359453 72872699 ~ 72873138 (+) True G744698
TU845459 lncRNA downstream 371135 72884381 ~ 72884637 (+) True G744795
XM_021613639.2 mRNA upstream 2358 72507698 ~ 72510508 (+) False LOC110530499
XR_005053035.1 mRNA upstream 11502 72501309 ~ 72501364 (+) True LOC118965654
XM_021613638.2 mRNA upstream 15896 72494045 ~ 72496970 (+) True LOC110530498
XM_021613635.2 mRNA upstream 167212 72341496 ~ 72345654 (+) True LOC110530496
XM_021611273.2 mRNA upstream 293419 72191167 ~ 72219447 (+) True LOC110529137
LOC110530976 mRNA downstream 28809 72542055 ~ 72555285 (+) False LOC110530976
XM_036986152.1 mRNA downstream 120992 72634238 ~ 72714065 (+) False LOC110530502
XM_021613643.2 mRNA downstream 154718 72667964 ~ 72711151 (+) False LOC110530502
XM_021613645.2 mRNA downstream 154718 72667964 ~ 72714065 (+) False LOC110530502
XM_036986153.1 mRNA downstream 266239 72779485 ~ 72872336 (+) False LOC110530507
TU843344 other upstream 797250 71704643 ~ 71715616 (+) False G742860
TU843351 other upstream 797250 71704643 ~ 71715616 (+) False G742860
TU843343 other upstream 797250 71713728 ~ 71715616 (+) True G742860
TU843350 other upstream 806324 71695602 ~ 71706542 (+) False G742860
TU842479 other upstream 1886122 70626221 ~ 70626744 (+) True G742095
TU844903 other downstream 29480 72542726 ~ 72555556 (+) False LOC110530976
TU844905 other downstream 29480 72542726 ~ 72555556 (+) False LOC110530976
TU844912 other downstream 29480 72542726 ~ 72555556 (+) False LOC110530976
TU844909 other downstream 38130 72551376 ~ 72555556 (+) True LOC110530976
TU844866 other downstream 121638 72634884 ~ 72642738 (+) True LOC110530502

Expression Profile