RNA id: TU845270


Basic Information

Item Value
RNA id TU845270
length 379
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G744625
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 72729708 ~ 72730086 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctatttagctagcttgctgttgctagctaacatgtcctgggatataaacattgagttgttattttacttgaaatgcacaaggtcctctactccgacaattaatccacacataaaactgtCAATGGAATCGTTTCTagacatctctcctccttccaggctttttcatctttgaacttatggcgattggcatctaaactttcatagtattactacACCGACCGGCAACACAGTTCGTtgttcaatcacccacgtgggtataaccaatgaggagatggcacgtgggtacctgcttctataaaccaatgaggagatgggagaggcaggacttgcagtgcgctctgcgtcagaaatagaaaggacttctattttagcccttggc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU844904 lncRNA upstream 174152 72551376 ~ 72555556 (+) False LOC110530976
TU844879 lncRNA upstream 216462 72512866 ~ 72513246 (+) True G744267
TU844876 lncRNA upstream 218118 72511386 ~ 72511590 (+) True G744264
TU844875 lncRNA upstream 219867 72507698 ~ 72509841 (+) True LOC110530499
TU844762 lncRNA upstream 372272 72357159 ~ 72357436 (+) True G744152
TU845321 lncRNA downstream 67655 72797741 ~ 72798967 (+) True G744668
TU845353 lncRNA downstream 142613 72872699 ~ 72873138 (+) True G744698
TU845459 lncRNA downstream 154295 72884381 ~ 72884637 (+) True G744795
TU845460 lncRNA downstream 155181 72885267 ~ 72885548 (+) True G744796
TU845470 lncRNA downstream 157786 72887872 ~ 72888104 (+) True G744806
XM_036986152.1 mRNA upstream 15643 72634238 ~ 72714065 (+) False LOC110530502
XM_021613645.2 mRNA upstream 15643 72667964 ~ 72714065 (+) False LOC110530502
XM_021613643.2 mRNA upstream 18557 72667964 ~ 72711151 (+) False LOC110530502
LOC110530976 mRNA upstream 174423 72542055 ~ 72555285 (+) False LOC110530976
XM_021613639.2 mRNA upstream 219200 72507698 ~ 72510508 (+) False LOC110530499
XM_036986153.1 mRNA downstream 49399 72779485 ~ 72872336 (+) False LOC110530507
XM_036986154.1 mRNA downstream 49399 72779485 ~ 72872336 (+) False LOC110530507
XM_036986156.1 mRNA downstream 49399 72779485 ~ 72872336 (+) False LOC110530507
XM_036986155.1 mRNA downstream 49400 72779486 ~ 72872336 (+) False LOC110530507
XM_021613652.2 mRNA downstream 171132 72901218 ~ 72909612 (+) False LOC110530508
TU844866 other upstream 86970 72634884 ~ 72642738 (+) True LOC110530502
TU844903 other upstream 174152 72542726 ~ 72555556 (+) False LOC110530976
TU844905 other upstream 174152 72542726 ~ 72555556 (+) False LOC110530976
TU844912 other upstream 174152 72542726 ~ 72555556 (+) False LOC110530976
TU844909 other upstream 174152 72551376 ~ 72555556 (+) True LOC110530976
TU845309 other downstream 130322 72860408 ~ 72872304 (+) True LOC110530507
TU845350 other downstream 132170 72862256 ~ 72864703 (+) True G744696
TU845352 other downstream 137015 72867101 ~ 72868382 (+) True G744697
TU845764 other downstream 519338 73249424 ~ 73250496 (+) True G745083
TU846133 other downstream 863551 73593637 ~ 73595238 (+) True G745410

Expression Profile