RNA id: TU845321



Basic Information


Item Value
RNA id TU845321
length 222
lncRNA type intronic
GC content 0.34
exon number 2
gene id G744668
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 72797741 ~ 72798967 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


atatatacagtgccttgcgaaagtattcggcccccttgaactttgagaccttttgccacatttcaggcttcaaacataaagatataaaactgtatttttttgtgaagaatcaacaacaagtgggacacaatcatgaagtggaacgacatttattggatatttcaaactttccaaaattttgcacgcccaatttttcagtttttgatttgttaaaaaagtttg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU845270 lncRNA upstream 67655 72729708 ~ 72730086 (+) True G744625
TU844904 lncRNA upstream 242185 72551376 ~ 72555556 (+) False LOC110530976
TU844879 lncRNA upstream 284495 72512866 ~ 72513246 (+) True G744267
TU844876 lncRNA upstream 286151 72511386 ~ 72511590 (+) True G744264
TU844875 lncRNA upstream 287900 72507698 ~ 72509841 (+) True LOC110530499
TU845353 lncRNA downstream 73732 72872699 ~ 72873138 (+) True G744698
TU845459 lncRNA downstream 85414 72884381 ~ 72884637 (+) True G744795
TU845460 lncRNA downstream 86300 72885267 ~ 72885548 (+) True G744796
TU845470 lncRNA downstream 88905 72887872 ~ 72888104 (+) True G744806
TU845481 lncRNA downstream 100693 72899660 ~ 72899959 (+) True G744817
XM_036986152.1 mRNA upstream 83676 72634238 ~ 72714065 (+) False LOC110530502
XM_021613645.2 mRNA upstream 83676 72667964 ~ 72714065 (+) False LOC110530502
XM_021613643.2 mRNA upstream 86590 72667964 ~ 72711151 (+) False LOC110530502
LOC110530976 mRNA upstream 242456 72542055 ~ 72555285 (+) False LOC110530976
XM_021613639.2 mRNA upstream 287233 72507698 ~ 72510508 (+) False LOC110530499
XM_021613652.2 mRNA downstream 102251 72901218 ~ 72909612 (+) False LOC110530508
XM_036986157.1 mRNA downstream 102288 72901255 ~ 72909612 (+) False LOC110530508
XM_021613653.2 mRNA downstream 102660 72901627 ~ 72909612 (+) True LOC110530508
XM_036986158.1 mRNA downstream 152235 72951202 ~ 72975991 (+) False LOC110530509
XR_005052946.1 mRNA downstream 152235 72951202 ~ 72975991 (+) False LOC110530509
TU844866 other upstream 155003 72634884 ~ 72642738 (+) True LOC110530502
TU844903 other upstream 242185 72542726 ~ 72555556 (+) False LOC110530976
TU845309 other downstream 61441 72860408 ~ 72872304 (+) True LOC110530507
TU845350 other downstream 63289 72862256 ~ 72864703 (+) True G744696
TU845352 other downstream 68134 72867101 ~ 72868382 (+) True G744697
TU845764 other downstream 450457 73249424 ~ 73250496 (+) True G745083
TU846133 other downstream 794670 73593637 ~ 73595238 (+) True G745410

Expression Profile