RNA id: TU845460


Basic Information

Item Value
RNA id TU845460
length 282
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G744796
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 72885267 ~ 72885548 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caactcgaaccttcagctccctccacagattttctatgggattaaggtctggagactggctaggccactccaggaccttaatgtgcttcttcttgagccactcctttgttgccttggctgtgtgttttgggtcattgtcatgctggaatacccatccacgacccatttacAATGCCCTGGctaagggaaggaggttctcacccaagatttgatggtacatggccccgtccatcgtccctttgatgcggtgaagttgtcctgtccccttagcaaaaaaacacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU845459 lncRNA upstream 630 72884381 ~ 72884637 (+) True G744795
TU845353 lncRNA upstream 12129 72872699 ~ 72873138 (+) True G744698
TU845321 lncRNA upstream 86300 72797741 ~ 72798967 (+) True G744668
TU845270 lncRNA upstream 155181 72729708 ~ 72730086 (+) True G744625
TU844904 lncRNA upstream 329711 72551376 ~ 72555556 (+) False LOC110530976
TU845470 lncRNA downstream 2324 72887872 ~ 72888104 (+) True G744806
TU845481 lncRNA downstream 14112 72899660 ~ 72899959 (+) True G744817
TU845482 lncRNA downstream 15173 72900721 ~ 72901020 (+) True G744818
TU845493 lncRNA downstream 42534 72928082 ~ 72928437 (+) True G744829
TU845503 lncRNA downstream 67129 72952677 ~ 72952885 (+) True G744839
XM_036986153.1 mRNA upstream 12931 72779485 ~ 72872336 (+) False LOC110530507
XM_036986154.1 mRNA upstream 12931 72779485 ~ 72872336 (+) False LOC110530507
XM_036986156.1 mRNA upstream 12931 72779485 ~ 72872336 (+) False LOC110530507
XM_036986155.1 mRNA upstream 12931 72779486 ~ 72872336 (+) False LOC110530507
XM_021613645.2 mRNA upstream 171202 72667964 ~ 72714065 (+) False LOC110530502
XM_021613652.2 mRNA downstream 15670 72901218 ~ 72909612 (+) False LOC110530508
XM_036986157.1 mRNA downstream 15707 72901255 ~ 72909612 (+) False LOC110530508
XM_021613653.2 mRNA downstream 16079 72901627 ~ 72909612 (+) True LOC110530508
XM_036986158.1 mRNA downstream 65654 72951202 ~ 72975991 (+) False LOC110530509
XR_005052946.1 mRNA downstream 65654 72951202 ~ 72975991 (+) False LOC110530509
TU845309 other upstream 12963 72860408 ~ 72872304 (+) True LOC110530507
TU845352 other upstream 16885 72867101 ~ 72868382 (+) True G744697
TU845350 other upstream 20564 72862256 ~ 72864703 (+) True G744696
TU844866 other upstream 242529 72634884 ~ 72642738 (+) True LOC110530502
TU844905 other upstream 329711 72542726 ~ 72555556 (+) False LOC110530976
TU845764 other downstream 363876 73249424 ~ 73250496 (+) True G745083
TU846133 other downstream 708089 73593637 ~ 73595238 (+) True G745410
TU846223 other downstream 834168 73719716 ~ 73720650 (+) True G745489
TU846883 other downstream 2067137 74952685 ~ 74953654 (+) False G746052
TU846909 other downstream 2129096 75014644 ~ 75033896 (+) False nedd8

Expression Profile