RNA id: TU845481


Basic Information

Item Value
RNA id TU845481
length 300
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G744817
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 72899660 ~ 72899959 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTATAGCCTAGCCCCTAGGCCTAGAACATAGATGTTCGTGCTATCCCTTTTACGCACGAGGAGCTTCCAATCAATCAATGGCGCATTAAACCAATAGGCATAGTTCTGATATATATTTTACAGGTATGCAGTTGCTTATACCTCTCTATAGACAACGTTTCTAAAATACTACCTAGGTTTGCCCTTTGCAAAGCAACGAAAAGTGAAAGGAATGCAAATAACAAGTGAAGGACAAATAGCTATGGGCTCTGATTTGATAAAATGCGTATTATCCAACTGGGAGTTGGAACACTTATTAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU845470 lncRNA upstream 11556 72887872 ~ 72888104 (+) True G744806
TU845460 lncRNA upstream 14112 72885267 ~ 72885548 (+) True G744796
TU845459 lncRNA upstream 15023 72884381 ~ 72884637 (+) True G744795
TU845353 lncRNA upstream 26522 72872699 ~ 72873138 (+) True G744698
TU845321 lncRNA upstream 100693 72797741 ~ 72798967 (+) True G744668
TU845482 lncRNA downstream 762 72900721 ~ 72901020 (+) True G744818
TU845493 lncRNA downstream 28123 72928082 ~ 72928437 (+) True G744829
TU845503 lncRNA downstream 52718 72952677 ~ 72952885 (+) True G744839
TU845466 lncRNA downstream 55774 72955733 ~ 72955899 (+) True LOC110530509
TU845465 lncRNA downstream 64363 72964322 ~ 72964612 (+) True G744801
XM_036986153.1 mRNA upstream 27324 72779485 ~ 72872336 (+) False LOC110530507
XM_036986154.1 mRNA upstream 27324 72779485 ~ 72872336 (+) False LOC110530507
XM_036986156.1 mRNA upstream 27324 72779485 ~ 72872336 (+) False LOC110530507
XM_036986155.1 mRNA upstream 27324 72779486 ~ 72872336 (+) False LOC110530507
XM_021613645.2 mRNA upstream 185595 72667964 ~ 72714065 (+) False LOC110530502
XM_021613652.2 mRNA downstream 1259 72901218 ~ 72909612 (+) False LOC110530508
XM_036986157.1 mRNA downstream 1296 72901255 ~ 72909612 (+) False LOC110530508
XM_021613653.2 mRNA downstream 1668 72901627 ~ 72909612 (+) True LOC110530508
XM_036986158.1 mRNA downstream 51243 72951202 ~ 72975991 (+) False LOC110530509
XR_005052946.1 mRNA downstream 51243 72951202 ~ 72975991 (+) False LOC110530509
TU845309 other upstream 27356 72860408 ~ 72872304 (+) True LOC110530507
TU845352 other upstream 31278 72867101 ~ 72868382 (+) True G744697
TU845350 other upstream 34957 72862256 ~ 72864703 (+) True G744696
TU844866 other upstream 256922 72634884 ~ 72642738 (+) True LOC110530502
TU844905 other upstream 344104 72542726 ~ 72555556 (+) False LOC110530976
TU845764 other downstream 349465 73249424 ~ 73250496 (+) True G745083
TU846133 other downstream 693678 73593637 ~ 73595238 (+) True G745410
TU846223 other downstream 819757 73719716 ~ 73720650 (+) True G745489
TU846883 other downstream 2052726 74952685 ~ 74953654 (+) False G746052
TU846909 other downstream 2114685 75014644 ~ 75033896 (+) False nedd8

Expression Profile