RNA id: TU845510


Basic Information

Item Value
RNA id TU845510
length 2418
lncRNA type antisense_over
GC content 0.40
exon number 2
gene id G744846
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 72984291 ~ 72987041 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cccaaaatcagAGAAATCTATAGTGGTGCATCTTTTCCACAACACCACTAGGAGGTTCTACTGCACATTACATTTCATCTGTCAAGACCGAGTTGCAATGCAGCCCACACAATAAAATAGTTAAAAATTAAGATTTTCATTCAAGACTGGATATTACAACATTGTGCATCTCCTTTCCAGCACCAATGCACAACATTGTCAAAAAGCATGTCTGTCACAAACATTTAGAGACACTAGTTGCCCTATAATAACCATTACATTAATATCTAGGCTCAGCCTTACATTCTGAAGTACTACAGACAACTGGACACTAACCTTAACTGTAAGCAAAAACATCACTTCAAAACAGGGAGTCAACCCAAGCTCACTACAATGTCAAAAAACAAAGAATAACTACTGTACTCCTTGGCCTAGAAAACCTCAGTACTTAGACTGACCTCTGGGCCCGTATtcactgatctagaatcagttctGCTTTTTCGATCATAATTAAATAGACAAGGGGACCCTGATCcgagatcagcactcttactctgagtCGCTTTGTGAATACGGACCCCTGGCTATAGGAATACAGTGTCACACAATATTGTTATTATAACATGAATAAAATGACCTCAATCCAACTGGTAAAGTGTTCAGTAACTGtggaaccatagaaatataattacagAATTATAGTTAGTGTGGATTACCAACACATCCAAGGTACATTTTTTCTTTAAATATTTtttcattattagttacattaCAGTGTAAATCGGTACAGTATACATCAATGATTCATCATATCAAATAGCTATCCTCAGAGAAGTCAACCTTTGCATATATCACTCTCTTTACACATAGTACTTAGCTAATCCCAATACAAAAAAACACTGGCTGGTTTCACAACTATTGATCCCCAAAAGAAACTAAAGGGTAGCATCGGTTTTATTATCCAAACTAGAAGGTTGTGGGAGTTGAAGTTTCTCCTAATGTCACACTGCGTTGAGAGAGAAAACAGTATACATCATCGTATTGCTGTTGATTTAGGGGGGTATTCTAGGTTACTGAAATGAGTTGTGTTCATTTGGCACCAAACAGAAAAAAGGGAcaaaaacagggagggactacctggtcCACAAAGCGTCTTCAGAGTAGGAATAGTGAATATTttgacactgctgctactcgctgtttattatctatgcagtcactttaaccctcctacatgtacaaattacctcgactaacctgtacattgactcggtagCGGTACCCCCTCAGTATTGTTATTTTAGTGTGTTTTTACTttaatttatttagtaaatattttcttaacactgcattgttggtgaagggcttgtaagtaagtgtttcatggtaaggtctactacacctgttgtattcggagcatgtgactaataacatttgatgatTTTGATCTAGGACCAGCTCCCACCTGTCAACGTAATcctattcattgtgatctaaaaggctaaactgatcctaaatcagtactgctactctgagatgctttgtgaatacaggccctggactTCAGTTGCAAAACATTTGCCACTGTGTGCACTATTGCATAACACCCAGAATTGCCCTTGAGAATTAAATTGGTGAAAAGAAGCATTTGAGAAGGCCTCTGACAGACACCCCACACTGTTATTCCTGAGTTGCATCCCTGCGATATGCTGCGTAGTGAATGGTTGATGAGTGTGTCAATAATCATAGAAACAGCTGCTCCTGTCACACTGAGTCACCCCACACAGTCTCTCCCAGACCAGACAGACTGGTTAGTTGGTTCATACCATTGTCCTGTCTCTAGAAGTTGAGGAGCACAGGGAGGAAGATGAGTCCGTGCGTGGCCCCCAGCAGCACCATGGCCAGGTACATGCGGAAGTAGAAGATCTGGAAGATCTGGGACTTGGACAGAGCCAGGATCAGGATGCCTCCAAACTTAGTCAAAGTGATGCCACTGAACACCTGGGAGAAGAGGAGCCATGGTTTAGTTATATTCTGCTGGTCAGCATTCCCTCCAGTCAATAATGAGTAAAATAACCAGTGTCTAAAAACCTGAGTAAAACAAGGAAGTCATTTCTACTTTTCTAGATATTCCATTCATGCCAAGAATTCAATTTTACTCCACAGTTCAGTTTGCAATACTATTTTTGCATGTCAGATATACTGCTATTTCAGAATTATTGGGCAAAGGATGAACTAAATgcttttcttaaaaaaaatattcagacAGTGTGACATTTCTATGGACAGAATACAGCGTTCCAGTCTGTGGTGAACTACAAAAGTAGAGCTGAGGTCTATTCATTAGTCCTattccgttgcaaaacattttgtctGGTGCAAACTGTCTTGCAACCTAAACACTTTACCGTTTACTCCAGATACCAcacggaagcaaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU845464 lncRNA upstream 5168 72977456 ~ 72979123 (+) True G744800
TU845465 lncRNA upstream 19679 72964322 ~ 72964612 (+) True G744801
TU845466 lncRNA upstream 28392 72955733 ~ 72955899 (+) True LOC110530509
TU845503 lncRNA upstream 31406 72952677 ~ 72952885 (+) True G744839
TU845493 lncRNA upstream 55854 72928082 ~ 72928437 (+) True G744829
TU845514 lncRNA downstream 6477 72993518 ~ 72993937 (+) True G744849
TU845552 lncRNA downstream 76922 73063963 ~ 73104651 (+) True G744883
TU845700 lncRNA downstream 134068 73121109 ~ 73121735 (+) True mmp16b
TU845704 lncRNA downstream 144027 73131068 ~ 73131355 (+) True G745028
TU845705 lncRNA downstream 145140 73132181 ~ 73132390 (+) True G745029
XR_005052946.1 mRNA upstream 8300 72951202 ~ 72975991 (+) False LOC110530509
XM_036986167.1 mRNA downstream 133788 73120829 ~ 73161313 (+) False mmp16b
XM_036986165.1 mRNA downstream 133790 73120831 ~ 73161313 (+) False mmp16b
XM_036986166.1 mRNA downstream 133791 73120832 ~ 73161313 (+) False mmp16b
XM_036986164.1 mRNA downstream 133796 73120837 ~ 73162119 (+) False mmp16b
LOC110530978 mRNA downstream 195129 73182170 ~ 73187819 (+) True LOC110530978
TU845309 other upstream 111987 72860408 ~ 72872304 (+) True LOC110530507
TU845352 other upstream 115909 72867101 ~ 72868382 (+) True G744697
TU845350 other upstream 119588 72862256 ~ 72864703 (+) True G744696
TU844866 other upstream 341553 72634884 ~ 72642738 (+) True LOC110530502
TU844905 other upstream 428735 72542726 ~ 72555556 (+) False LOC110530976
TU845764 other downstream 262383 73249424 ~ 73250496 (+) True G745083
TU846133 other downstream 606596 73593637 ~ 73595238 (+) True G745410
TU846223 other downstream 732675 73719716 ~ 73720650 (+) True G745489
TU846883 other downstream 1965644 74952685 ~ 74953654 (+) False G746052
TU846909 other downstream 2027603 75014644 ~ 75033896 (+) False nedd8

Expression Profile