RNA id: TU845704



Basic Information


Item Value
RNA id TU845704
length 288
lncRNA type intronic
GC content 0.53
exon number 1
gene id G745028
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 73131068 ~ 73131355 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gggtgctctctctgctgtttcctgaagtccacgatcatctcctttgttttgttgacgttaagtGAGAGGTTGGtttcctgacatcacactccaagtgccctcacctcctccctataggctgtctcgtcgttgttggtgatcaggcccactactgttgtgtcgtctgaaaacttgatgattgagttggaggcgtgcatggccacgcagtcgtgggtgaacagggagtacaggagaggactgagcacacactcttgtggggccccagtgttgagggtcagtgaagtggag

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU845700 lncRNA upstream 9333 73121109 ~ 73121735 (+) True mmp16b
TU845552 lncRNA upstream 26417 73063963 ~ 73104651 (+) True G744883
TU845514 lncRNA upstream 137131 72993518 ~ 72993937 (+) True G744849
TU845510 lncRNA upstream 144027 72984291 ~ 72987041 (+) True G744846
TU845464 lncRNA upstream 151945 72977456 ~ 72979123 (+) True G744800
TU845705 lncRNA downstream 826 73132181 ~ 73132390 (+) True G745029
TU845711 lncRNA downstream 16721 73148076 ~ 73148322 (+) True G745035
TU845712 lncRNA downstream 17884 73149239 ~ 73149577 (+) True G745036
TU845713 lncRNA downstream 18945 73150300 ~ 73150602 (+) True G745037
TU845729 lncRNA downstream 43826 73175181 ~ 73175535 (+) True G745050
XR_005052946.1 mRNA upstream 155077 72951202 ~ 72975991 (+) False LOC110530509
LOC110530978 mRNA downstream 50815 73182170 ~ 73187819 (+) True LOC110530978
XM_021613667.2 mRNA downstream 92816 73224171 ~ 73227167 (+) False samd13
XM_021613669.2 mRNA downstream 92904 73224259 ~ 73227167 (+) True samd13
XM_036986854.1 mRNA downstream 155896 73287251 ~ 73290541 (+) True LOC110530979
XM_021613673.2 mRNA downstream 182636 73313991 ~ 73320557 (+) False LOC110530519
TU845309 other upstream 258764 72860408 ~ 72872304 (+) True LOC110530507
TU845352 other upstream 262686 72867101 ~ 72868382 (+) True G744697
TU845350 other upstream 266365 72862256 ~ 72864703 (+) True G744696
TU844866 other upstream 488330 72634884 ~ 72642738 (+) True LOC110530502
TU844905 other upstream 575512 72542726 ~ 72555556 (+) False LOC110530976
TU845764 other downstream 118069 73249424 ~ 73250496 (+) True G745083
TU846133 other downstream 462282 73593637 ~ 73595238 (+) True G745410
TU846223 other downstream 588361 73719716 ~ 73720650 (+) True G745489
TU846883 other downstream 1821330 74952685 ~ 74953654 (+) False G746052
TU846909 other downstream 1883289 75014644 ~ 75033896 (+) False nedd8

Expression Profile