RNA id: TU845733



Basic Information


Item Value
RNA id TU845733
length 337
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G745054
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 73180581 ~ 73182057 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GTATAGAACCTGTTACAGCAAGTAGTCTAAAACCCTTATAGCAGGTTGTATAGAACCTGTTACAGCAAGTAGTCTAAAACCCTTACAGCAGGTAGTATAGAACCTGTTACAGCAAGTAGTATAAAACCCTTACAGCAGGTAGTCTAAAACCCTTACAGCAGGTAGTCTAAAACCCTTACAGCAGGTAGTCTAAAACCCTTACAGCAGGTAGTCTAAAACCTGTTATAGCAGGTAGTCTAGAATCTttacagcaggtagtctagaACCTGTTATAGCAGGTAGACTAAAATCCTTACAGCAGGTAGTCTAAAACCCTTACAGCAGGTAGTCTAAAACC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU845729 lncRNA upstream 5046 73175181 ~ 73175535 (+) True G745050
TU845713 lncRNA upstream 29979 73150300 ~ 73150602 (+) True G745037
TU845712 lncRNA upstream 31004 73149239 ~ 73149577 (+) True G745036
TU845711 lncRNA upstream 32259 73148076 ~ 73148322 (+) True G745035
TU845705 lncRNA upstream 48191 73132181 ~ 73132390 (+) True G745029
TU845741 lncRNA downstream 45167 73227224 ~ 73308294 (+) True G745061
TU845745 lncRNA downstream 45587 73227644 ~ 73228429 (+) True G745064
TU845804 lncRNA downstream 139223 73321280 ~ 73322029 (+) True G745122
TU845972 lncRNA downstream 182750 73364807 ~ 73365138 (+) True G745271
TU845979 lncRNA downstream 188324 73370381 ~ 73371047 (+) False G745278
XM_036986164.1 mRNA upstream 18462 73120837 ~ 73162119 (+) False mmp16b
XM_036986167.1 mRNA upstream 19268 73120829 ~ 73161313 (+) False mmp16b
XM_036986165.1 mRNA upstream 19268 73120831 ~ 73161313 (+) False mmp16b
XM_036986166.1 mRNA upstream 19268 73120832 ~ 73161313 (+) False mmp16b
XM_036986162.1 mRNA upstream 204590 72963803 ~ 72975991 (+) False LOC110530509
LOC110530978 mRNA downstream 113 73182170 ~ 73187819 (+) True LOC110530978
XM_021613667.2 mRNA downstream 42114 73224171 ~ 73227167 (+) False samd13
XM_021613669.2 mRNA downstream 42202 73224259 ~ 73227167 (+) True samd13
XM_036986854.1 mRNA downstream 105194 73287251 ~ 73290541 (+) True LOC110530979
XM_021613673.2 mRNA downstream 131934 73313991 ~ 73320557 (+) False LOC110530519
TU845309 other upstream 308277 72860408 ~ 72872304 (+) True LOC110530507
TU845352 other upstream 312199 72867101 ~ 72868382 (+) True G744697
TU845350 other upstream 315878 72862256 ~ 72864703 (+) True G744696
TU844866 other upstream 537843 72634884 ~ 72642738 (+) True LOC110530502
TU844905 other upstream 625025 72542726 ~ 72555556 (+) False LOC110530976
TU845764 other downstream 67367 73249424 ~ 73250496 (+) True G745083
TU846133 other downstream 411580 73593637 ~ 73595238 (+) True G745410
TU846223 other downstream 537659 73719716 ~ 73720650 (+) True G745489
TU846883 other downstream 1770628 74952685 ~ 74953654 (+) False G746052
TU846909 other downstream 1832587 75014644 ~ 75033896 (+) False nedd8

Expression Profile