RNA id: TU846013


Basic Information

Item Value
RNA id TU846013
length 2004
lncRNA type antisense_over
GC content 0.42
exon number 2
gene id G745305
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 73397908 ~ 73399962 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGTAGTAGTACAGTGAATGGGAAGAAAAATGCGTACAAAAGTCCTTTTCTCTTTTCAGCACTGTTGGAATTCCTAAATCAAATTTACAAAATATCGTTGGACCATTTAATTGAGCATTTTCTTATACGAGCAGGGTTACAGTTATCATCATAGTCTAGAAGTAAAAAGCAATAATATCTCTATTCTTTCATAATCTTCTAAAGTCACCACGTTTTGCCATTTGTAACTCTGTGGAGCAGACGGACCTACCAGATGCCCCAAACCTTTAGTTGCATGAATCAACCGTGTTACTGTAATACAATGGCATGACGATATAACAGTGACATGAATCAACCGTGTTACTGTAATACAATGACATGACGATATAACAGTGACATGAATCAACCGTGTTACTGTAATACAATGACATGACGATATAACAGTGAAGGAGCAACGCAACACAACCGATGATAATAAGGCATAGTAATGCACTCTGGAGTCTACTGCTGGCTGGGCCGTCACAACTAGCTTATTGGTTTGAATCCTAGAAACCACCCATGTGTAGCAGACCTGGGTTCCAATAGTAtttcaaatcatttcaaatactttagcggTGTGTGATTGAGCTTGCCCGTTGCTATAGAATCAATAGAAAAGTCCCTAAAGTGCAAACCCCGCCAACATGGCACTCGAGGCAGGCTTAAGCAAATGCTCAAAAGTATTTGGAAggtttaaatagtatttgaacccaggtctggtagcAGTTGAGTAGGTCAACAAAGAGATTGAAAGCAAACATTGAAGGATGGGTAGTACACCTGTTCAGTAGTCTAAAACAGTTAAAAGGTAAAAGTGACAGACTTTATTGGCCTGTGGATCCTTTATTTTGTGTGTGAGGATGGCCATTTTATTTTCAAAAGAGTGAGTTACGTCCTACGTAGGTAGCAGGTGTCCCCCATCGTTGCTTTGATTCAACGGCTATGTAACACAGATTCACAGTTCATATGTCACAGACTGACTGACCAAACCCAACACAGAAACAGAAagtaaaataatcaaataaaatgtcaaGAAAGCAAAGCAAAAATCCAGACAATACAGACAGAGGTGCTGGTGTGGCATTGCTTTAAAGTTGAGAGAGCCACAGGTAGGTTGCATCAGAGAGGCAGACGACAGGCCTATCTTTTGGCACAGAGATTCCGGTGTAAGGGGTCTTGAGGAAATCTTATTTACAAAACAGAAGTTTGGCAAACAGGAATTATTTCGACTGATGCCTCGAAGCTGTTTTCGTTATCCATAAAATGCTCAGAAGCGTCAACTCAGAAGTCGCAGCTTACaaaataaaaattatatttttatCTTTAAGCATTGAAAAGGAAGCTATGAAGCTATGGAGAACAGTTGTCTCGCAGTCTCTGCTGTGTTTCGCTGGATCCACAATACATAGTCTGTTCATGCCAATGGAACAAGTCAGCTGTTTGAAAACATTTTGCAAATCCATCTGTTCTACACAGTGAGTACTCTGAGGCGGGTGGCAGTTCTCCAAACGAAGGGTATAACCCCATAGGACACCATTCCTCCTCAAAATCACCCCAAAAATGATTTAATCCTTAGAACCCATGAGAATCCTCATCCTGACCATGCAGTTTGATTGGTCCTCCCAGGTCACATGATAGATAAGGTGTCTCCGCCCACTGACCTGTGGCAGGAAGTTGTCGTGGTAACGACCCACTGCTACAGTTTGGTCAAAGATCATAGGTCACTTCATGGGAGATAGGGCTTCCGATTGGCTGCGGGTGGGGGGAAAGACAGCATGTGAGGAGAGTGTTGTGCTGTCCAGCTCAGGAAAGAAGCCAATCCTATGATATTGCTGCTTTAGGCTGCCAATATCTGCATTCTCCAGAACAGAGATCCGTGTAATCAAGTTATTAGGAGGGACATAGGAGTCCagagtctcctctcctccgtctctcagtccgctgtcctcctctcctctcatcttcttctATCCTCCTGACGGTCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU846011 lncRNA upstream 406 73396993 ~ 73397502 (+) True G745304
TU845994 lncRNA upstream 1490 73394891 ~ 73396418 (+) True G745291
TU845988 lncRNA upstream 15153 73382545 ~ 73382755 (+) True G745286
TU845980 lncRNA upstream 25301 73370381 ~ 73372607 (+) True G745278
TU845979 lncRNA upstream 26861 73370381 ~ 73371047 (+) False G745278
TU846037 lncRNA downstream 42762 73442724 ~ 73443676 (+) True G745325
TU846096 lncRNA downstream 84386 73484348 ~ 73484586 (+) True G745379
TU846130 lncRNA downstream 163874 73563836 ~ 73621000 (+) False G745407
TU846129 lncRNA downstream 169409 73569371 ~ 73621000 (+) False G745407
TU846151 lncRNA downstream 200022 73599984 ~ 73604429 (+) True G745426
NM_001124624.1 mRNA upstream 6491 73385749 ~ 73391417 (+) True c8a
XM_021613674.2 mRNA upstream 63074 73325167 ~ 73334834 (+) True LOC110530520
XM_021613673.2 mRNA upstream 77351 73313991 ~ 73320557 (+) False LOC110530519
XM_021613672.2 mRNA upstream 77351 73314305 ~ 73320557 (+) True LOC110530519
XM_036986854.1 mRNA upstream 107367 73287251 ~ 73290541 (+) True LOC110530979
XM_021613688.2 mRNA downstream 292338 73692300 ~ 73696186 (+) True LOC110530527
XR_002474545.2 mRNA downstream 302448 73702410 ~ 73704583 (+) False LOC110530528
XR_005052949.1 mRNA downstream 302448 73702410 ~ 73704583 (+) False LOC110530528
XM_036986183.1 mRNA downstream 305864 73705826 ~ 73719262 (+) True LOC110530529
XM_021613694.2 mRNA downstream 334865 73734827 ~ 73736698 (+) True LOC110530532
TU845764 other upstream 147412 73249424 ~ 73250496 (+) True G745083
TU845309 other upstream 525604 72860408 ~ 72872304 (+) True LOC110530507
TU845352 other upstream 529526 72867101 ~ 72868382 (+) True G744697
TU845350 other upstream 533205 72862256 ~ 72864703 (+) True G744696
TU844866 other upstream 755170 72634884 ~ 72642738 (+) True LOC110530502
TU846133 other downstream 193675 73593637 ~ 73595238 (+) True G745410
TU846223 other downstream 319754 73719716 ~ 73720650 (+) True G745489
TU846883 other downstream 1552723 74952685 ~ 74953654 (+) False G746052
TU846909 other downstream 1614682 75014644 ~ 75033896 (+) False nedd8
TU846908 other downstream 1623202 75023164 ~ 75033896 (+) False nedd8

Expression Profile