RNA id: TU846128


Basic Information

Item Value
RNA id TU846128
length 1739
lncRNA type antisense_over
GC content 0.44
exon number 2
gene id G745407
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 73563836 ~ 73621000 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGGAATAGTTTAttgaagagagatacagacacacagaaagaaaAGAACCACTGTTGCAATTCAATTCCCAATTAATCTAAATCCTCCTACATACAATATATTTTCATAACTATAGGAACCACATTGTTGATGTTCTGCTTGATATTGTATGATTTCCTTTTTATAATTAACTTTGGCAATACAGACTTGTAACTCATGCCACTATGGCGGTCTAATTGATCTATTTAGAGAAGTAGAGCGAGAGAACACTAGAGACATTGAGAGAACAAGCGCTAGATTGTAACAAGGTCATTATAGTCAACAGTCACCTCTGTATTATTAATAccttggtgtgtatgtatgtactgcaGAACACAGTCTCAAAAGAGGACCACATACATACACAATAACAAACTGACAGAGAGCACTTTACACAAATCCACCTTAAGCTCTGGGCACAGTGGCTGACTGGACTCAGgactggggaggaagagggagaggagaaaaggagaggacagggagaggaggatatgtTTTACACAGTTCTGAAGTGGCATGTGATCAGTCATGAACACAGGGGAGGTTTGAATCCAACCTGAGGCAAAGGCTAAATGGAGAATGTCACTGTTCTCAGTCACACAGAGATATGTATCTTCCCATAATTGTTGCCGGTAATATCAgtgtatttctctgtctctctgtgtgttgggaATACTTCCTTCCATCTCGCCAGCCAGCCTCTGTGAGTTTGAGCTTAAAGGTGTGAGGAAGATTTCCACTTGACCAgtgatacagtagatacaggCATACCATTTATTGAGGCTGTTTTGCTTTGAACAATGTCCTCAGCCTTGTTCTATGTGTATTGACTGCTACTACAACACAGGAACAAATCACACAGTAATCCAACATCAAATTAGTCCCAAGGGTCTTGATTTATTAACAGCTTACAACTCAAACATCAAACCAACGTGCAGACAGACAATACATGCACACGTGTtggcacactctcacacacatatatatgcaCAAATATATGCACACacttacattcacacacacgcacacacactccactaAGACATATTCTTTCCTCTCTAAGAGAAGAACACCTAGCCAATAACCCACAGAAAGAAGGTGTTGTACAATATGTAATATATGATACTAAAACTAACTTGGCCCAGATAGGCCAATTAgaccccctcccacacacacacacacacacatgcaataaAAGCAACCTATGTGCCATGCTGCATTTTGGAATGGGTAGGGCAGTGCCACTGCTGAGCATAGATATGTAGAGAAGCAGCAAGTGGGGTCTAGGTGGAGGTGGGTGGAGGGTGAGGATGGGGTTCTAGGGACAGCAAGTTGGGTTCTAGGTAAGGGAGATGGAGGTTTTCTAGGGGCTGAAACTCAGTTGGAACTGGATCTGCTAAACAGACCTGGACCACAGGTGAGCACAAGCACACATACAGAAAGATACACCACAAGACAAGCACCATACTGTACATAGATACATGGACATCGATCGTCACCTGGcgtgaggtcaggggtcagggacagAGGGCAAAAGGTTCAATGTCTGCACTATGTAAAGGATAGACAGAAGAGGGGCTTGTGGAGGATAGGGGGAATGGGGTTGGTATGGGGACAGATGAGCGCTAGGGGATGAGCGCTAGGCCCTTAAGAGATCACAAGCTCTTTTGACTGCTTAAGATGGGGGGACATTTCTTGTTGGAGAAGGAGGAGGTCGCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU846153 lncRNA upstream 11843 73606899 ~ 73607383 (+) True G745428
TU846151 lncRNA upstream 14797 73599984 ~ 73604429 (+) True G745426
TU846096 lncRNA upstream 134640 73484348 ~ 73484586 (+) True G745379
TU846037 lncRNA upstream 175550 73442724 ~ 73443676 (+) True G745325
TU846013 lncRNA upstream 219264 73397908 ~ 73399962 (+) False G745305
TU846217 lncRNA downstream 81431 73702431 ~ 73704416 (+) False LOC110530528
TU846218 lncRNA downstream 81431 73702431 ~ 73704416 (+) True LOC110530528
TU846238 lncRNA downstream 128153 73749153 ~ 73749581 (+) True G745497
TU846240 lncRNA downstream 130152 73751152 ~ 73751462 (+) True G745499
TU846241 lncRNA downstream 131444 73752444 ~ 73752723 (+) True G745500
NM_001124624.1 mRNA upstream 227809 73385749 ~ 73391417 (+) True c8a
XM_021613674.2 mRNA upstream 284392 73325167 ~ 73334834 (+) True LOC110530520
XM_021613673.2 mRNA upstream 298669 73313991 ~ 73320557 (+) False LOC110530519
XM_021613672.2 mRNA upstream 298669 73314305 ~ 73320557 (+) True LOC110530519
XM_036986854.1 mRNA upstream 328685 73287251 ~ 73290541 (+) True LOC110530979
XM_021613688.2 mRNA downstream 71300 73692300 ~ 73696186 (+) True LOC110530527
XR_002474545.2 mRNA downstream 81410 73702410 ~ 73704583 (+) False LOC110530528
XR_005052949.1 mRNA downstream 81410 73702410 ~ 73704583 (+) False LOC110530528
XM_036986183.1 mRNA downstream 84826 73705826 ~ 73719262 (+) True LOC110530529
XM_021613694.2 mRNA downstream 113827 73734827 ~ 73736698 (+) True LOC110530532
TU846133 other upstream 23988 73593637 ~ 73595238 (+) True G745410
TU845764 other upstream 368730 73249424 ~ 73250496 (+) True G745083
TU845309 other upstream 746922 72860408 ~ 72872304 (+) True LOC110530507
TU846223 other downstream 98716 73719716 ~ 73720650 (+) True G745489
TU846883 other downstream 1331685 74952685 ~ 74953654 (+) False G746052
TU846909 other downstream 1393644 75014644 ~ 75033896 (+) False nedd8
TU846908 other downstream 1402164 75023164 ~ 75033896 (+) False nedd8
TU846907 other downstream 1410930 75031930 ~ 75033896 (+) True nedd8

Expression Profile