RNA id: TU846151



Basic Information


Item Value
RNA id TU846151
length 786
lncRNA type antisense_over
GC content 0.44
exon number 4
gene id G745426
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 73599984 ~ 73604429 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TTGGCTGATCCTATGAGGTCATTTGAAGCCTTGTCCTCTGCAGGAACGTATCCAGGAGGATAATCTGAAGGTCACACAAACACAGGAGAGATAACATCACACTCACCAGGAACAACATCCAAACAGTTCAAAGGTGAGAGGTACAAATTACATTAACCTGTGATGGGTTGGGATTCCTAAATGTTAACTATTGTTAATCCTAAGTTCTACTAGAGACATGAGGGGTGCCATAGTCTAGGGTTAGAGCTTTCATAGTGTCCGTCAATTTCTTACTCTGATATTTAGAACCTAACACCTGTATAAGGACTTTGTTGACATATTACATCTAGTCTCGTCATAAGGTGAACATGTTGCTGTGTACTTGTAACATGTTAATGTACATTGATGAATGCGTCATATCTTATCATGCATTTCCTGTCTGATACGCATGACCAGAGACATTTTATTGATATGTTTATGACCATGATGGTTGAGAGAATTTTGATAAGTATTTCAGATAGTGCAGAAGAACAGGAGGCTCTCACCGAGGTCGTCATCCTGGTCATCTAGTCTGTCCAGGGGGTCAGCGATCTCCTCATACTCCTCCACCATACTCGTTCCAAAAACCCTTATGAGACTAAGGGGGCAGAAGTGTTCAGATCCATGGTGAGAGACCAGCTCCACCTTTATGTACTTGGTGAACATCTTGACATATTTGGCGTACAGGTGCTCGTCCAGAGGGAAACTCTGAACAGTGCGCTCCTCCCGAGCATGAAAAGTGCCCAGCTTCACCCACTTGTTGGTCGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU846096 lncRNA upstream 115398 73484348 ~ 73484586 (+) True G745379
TU846037 lncRNA upstream 156308 73442724 ~ 73443676 (+) True G745325
TU846013 lncRNA upstream 200022 73397908 ~ 73399962 (+) False G745305
TU846014 lncRNA upstream 200022 73397908 ~ 73399962 (+) True G745305
TU846011 lncRNA upstream 202482 73396993 ~ 73397502 (+) True G745304
TU846153 lncRNA downstream 2470 73606899 ~ 73607383 (+) True G745428
TU846128 lncRNA downstream 14797 73619226 ~ 73621000 (+) True G745407
TU846217 lncRNA downstream 98002 73702431 ~ 73704416 (+) False LOC110530528
TU846218 lncRNA downstream 98002 73702431 ~ 73704416 (+) True LOC110530528
TU846238 lncRNA downstream 144724 73749153 ~ 73749581 (+) True G745497
NM_001124624.1 mRNA upstream 208567 73385749 ~ 73391417 (+) True c8a
XM_021613674.2 mRNA upstream 265150 73325167 ~ 73334834 (+) True LOC110530520
XM_021613673.2 mRNA upstream 279427 73313991 ~ 73320557 (+) False LOC110530519
XM_021613672.2 mRNA upstream 279427 73314305 ~ 73320557 (+) True LOC110530519
XM_036986854.1 mRNA upstream 309443 73287251 ~ 73290541 (+) True LOC110530979
XM_021613688.2 mRNA downstream 87871 73692300 ~ 73696186 (+) True LOC110530527
XR_002474545.2 mRNA downstream 97981 73702410 ~ 73704583 (+) False LOC110530528
XR_005052949.1 mRNA downstream 97981 73702410 ~ 73704583 (+) False LOC110530528
XM_036986183.1 mRNA downstream 101397 73705826 ~ 73719262 (+) True LOC110530529
XM_021613694.2 mRNA downstream 130398 73734827 ~ 73736698 (+) True LOC110530532
TU846133 other upstream 4746 73593637 ~ 73595238 (+) True G745410
TU845764 other upstream 349488 73249424 ~ 73250496 (+) True G745083
TU845309 other upstream 727680 72860408 ~ 72872304 (+) True LOC110530507
TU845352 other upstream 731602 72867101 ~ 72868382 (+) True G744697
TU845350 other upstream 735281 72862256 ~ 72864703 (+) True G744696
TU846223 other downstream 115287 73719716 ~ 73720650 (+) True G745489
TU846883 other downstream 1348256 74952685 ~ 74953654 (+) False G746052
TU846909 other downstream 1410215 75014644 ~ 75033896 (+) False nedd8
TU846908 other downstream 1418735 75023164 ~ 75033896 (+) False nedd8
TU846907 other downstream 1427501 75031930 ~ 75033896 (+) True nedd8

Expression Profile