RNA id: TU846153



Basic Information


Item Value
RNA id TU846153
length 419
lncRNA type antisense_over
GC content 0.55
exon number 2
gene id G745428
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 73606899 ~ 73607383 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TGTTGGAGCCGCTACTCAGGCAGGTCCAGGATTCATCAAAGGGGTTGGTTTCTCCAGCTTCACAGTCGTCTGTGGCAAGATCAGTATCGCTGAATTCCGGTACAAGGACATCAGACAAAGTATCCTCTGGTACACTAGAGGATGAGCCATGGGGCATGGAGGGGTCTTCAGTGACGGGGTTGAGGGCAGAGGATAGAGGGAATAGGTCAGAGGTGGGTGTTGGCTGCAGCTCTTGGGTGACAACGGGCTCTGGAGGTGGCTGCTCGGCCtctggttctgctgtctctggttctgctgtctctggttctgctgtctctggttctgctgtctctggttctgctgtctctggttctgctgtctctggttctgctgtctctggctcggcctctggttctgctgtctctggctccttcTCAGAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU846151 lncRNA upstream 2470 73599984 ~ 73604429 (+) True G745426
TU846096 lncRNA upstream 122313 73484348 ~ 73484586 (+) True G745379
TU846037 lncRNA upstream 163223 73442724 ~ 73443676 (+) True G745325
TU846013 lncRNA upstream 206937 73397908 ~ 73399962 (+) False G745305
TU846014 lncRNA upstream 206937 73397908 ~ 73399962 (+) True G745305
TU846128 lncRNA downstream 11843 73619226 ~ 73621000 (+) True G745407
TU846217 lncRNA downstream 95048 73702431 ~ 73704416 (+) False LOC110530528
TU846218 lncRNA downstream 95048 73702431 ~ 73704416 (+) True LOC110530528
TU846238 lncRNA downstream 141770 73749153 ~ 73749581 (+) True G745497
TU846240 lncRNA downstream 143769 73751152 ~ 73751462 (+) True G745499
NM_001124624.1 mRNA upstream 215482 73385749 ~ 73391417 (+) True c8a
XM_021613674.2 mRNA upstream 272065 73325167 ~ 73334834 (+) True LOC110530520
XM_021613673.2 mRNA upstream 286342 73313991 ~ 73320557 (+) False LOC110530519
XM_021613672.2 mRNA upstream 286342 73314305 ~ 73320557 (+) True LOC110530519
XM_036986854.1 mRNA upstream 316358 73287251 ~ 73290541 (+) True LOC110530979
XM_021613688.2 mRNA downstream 84917 73692300 ~ 73696186 (+) True LOC110530527
XR_002474545.2 mRNA downstream 95027 73702410 ~ 73704583 (+) False LOC110530528
XR_005052949.1 mRNA downstream 95027 73702410 ~ 73704583 (+) False LOC110530528
XM_036986183.1 mRNA downstream 98443 73705826 ~ 73719262 (+) True LOC110530529
XM_021613694.2 mRNA downstream 127444 73734827 ~ 73736698 (+) True LOC110530532
TU846133 other upstream 11661 73593637 ~ 73595238 (+) True G745410
TU845764 other upstream 356403 73249424 ~ 73250496 (+) True G745083
TU845309 other upstream 734595 72860408 ~ 72872304 (+) True LOC110530507
TU846223 other downstream 112333 73719716 ~ 73720650 (+) True G745489
TU846883 other downstream 1345302 74952685 ~ 74953654 (+) False G746052
TU846909 other downstream 1407261 75014644 ~ 75033896 (+) False nedd8
TU846908 other downstream 1415781 75023164 ~ 75033896 (+) False nedd8
TU846907 other downstream 1424547 75031930 ~ 75033896 (+) True nedd8

Expression Profile