RNA id: TU846238


Basic Information

Item Value
RNA id TU846238
length 429
lncRNA type intronic
GC content 0.48
exon number 1
gene id G745497
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 73749153 ~ 73749581 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctgctggacactgtgatcacttggctacatagctgatgcctgctggactgtccattaatcacggtactccattctgtttgtttatgtttttatctgtcggccccagccgcactcaggctctgtgtgtagttaatccgaccctctctgcctagtctcacctgctgttttagctagctctcccaatcaacacctgcgattactgtatgcctcgctgtatgtctctctcaaatgtcaatatgccttgtatactgttgttcaggttagttatcattgctttagtttacaatggagcccctagttccactcttcatacctctgatacctcctttgtcccacctcccacacatgcagtgacctcacccattacaaccagcatgtccagagatacaacctctcttatcatcacccagtgcctgggcttaccttcgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU846217 lncRNA upstream 44737 73702431 ~ 73704416 (+) False LOC110530528
TU846218 lncRNA upstream 44737 73702431 ~ 73704416 (+) True LOC110530528
TU846130 lncRNA upstream 128153 73563836 ~ 73621000 (+) False G745407
TU846240 lncRNA downstream 1571 73751152 ~ 73751462 (+) True G745499
TU846241 lncRNA downstream 2863 73752444 ~ 73752723 (+) True G745500
TU846242 lncRNA downstream 4023 73753604 ~ 73753865 (+) True G745501
TU846254 lncRNA downstream 21326 73770907 ~ 73771852 (+) True si:ch1073-82l19.1
TU846277 lncRNA downstream 60382 73809963 ~ 73811422 (+) True G745534
XM_021613694.2 mRNA upstream 12455 73734827 ~ 73736698 (+) True LOC110530532
XM_036986183.1 mRNA upstream 29891 73705826 ~ 73719262 (+) True LOC110530529
XR_002474545.2 mRNA upstream 44570 73702410 ~ 73704583 (+) False LOC110530528
XR_005052949.1 mRNA upstream 44570 73702410 ~ 73704583 (+) False LOC110530528
XM_021613688.2 mRNA upstream 52967 73692300 ~ 73696186 (+) True LOC110530527
XM_021613693.2 mRNA downstream 4432 73754013 ~ 73761732 (+) True LOC110530531
XM_036986184.1 mRNA downstream 21301 73770882 ~ 73793820 (+) False si:ch1073-82l19.1
XM_021613696.2 mRNA downstream 85249 73834830 ~ 73837375 (+) False LOC110530534
XM_036986189.1 mRNA downstream 85311 73834892 ~ 73837375 (+) True LOC110530534
XR_005052951.1 mRNA downstream 95067 73844648 ~ 73859462 (+) False LOC110530535
TU846223 other upstream 28503 73719716 ~ 73720650 (+) True G745489
TU846133 other upstream 153915 73593637 ~ 73595238 (+) True G745410
TU845764 other upstream 498657 73249424 ~ 73250496 (+) True G745083
TU845309 other upstream 876849 72860408 ~ 72872304 (+) True LOC110530507
TU846883 other downstream 1203104 74952685 ~ 74953654 (+) False G746052
TU846909 other downstream 1265063 75014644 ~ 75033896 (+) False nedd8
TU846908 other downstream 1273583 75023164 ~ 75033896 (+) False nedd8
TU846907 other downstream 1282349 75031930 ~ 75033896 (+) True nedd8
TU847942 other downstream 1578191 75327772 ~ 75328195 (+) True G746936

Expression Profile