RNA id: TU846241


Basic Information

Item Value
RNA id TU846241
length 280
lncRNA type intronic
GC content 0.34
exon number 1
gene id G745500
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 73752444 ~ 73752723 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtaaatagcccacccaatttacctacctcatccccatactgtttatatttatttacttttcttctcttttgcacaccagtatctctacctgtacatgaccatttgataatttatcactccagtgttaatctgcaaaattgtaattatttgcctacctcctcatgccttttgcacacaatgtatatagactctcttttttttctctttttttttctactgtgttattgacttgttaattgtttactccatgtgtaactctgtgttgtctgttcacactgct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU846240 lncRNA upstream 982 73751152 ~ 73751462 (+) True G745499
TU846238 lncRNA upstream 2863 73749153 ~ 73749581 (+) True G745497
TU846217 lncRNA upstream 48028 73702431 ~ 73704416 (+) False LOC110530528
TU846218 lncRNA upstream 48028 73702431 ~ 73704416 (+) True LOC110530528
TU846128 lncRNA upstream 131444 73619226 ~ 73621000 (+) True G745407
TU846242 lncRNA downstream 881 73753604 ~ 73753865 (+) True G745501
TU846254 lncRNA downstream 18184 73770907 ~ 73771852 (+) True si:ch1073-82l19.1
TU846277 lncRNA downstream 57240 73809963 ~ 73811422 (+) True G745534
TU846304 lncRNA downstream 117707 73870430 ~ 73882450 (+) False G745557
TU846302 lncRNA downstream 123575 73876298 ~ 73882450 (+) True G745557
XM_021613694.2 mRNA upstream 15746 73734827 ~ 73736698 (+) True LOC110530532
XM_036986183.1 mRNA upstream 33182 73705826 ~ 73719262 (+) True LOC110530529
XR_002474545.2 mRNA upstream 47861 73702410 ~ 73704583 (+) False LOC110530528
XR_005052949.1 mRNA upstream 47861 73702410 ~ 73704583 (+) False LOC110530528
XM_021613688.2 mRNA upstream 56258 73692300 ~ 73696186 (+) True LOC110530527
XM_021613693.2 mRNA downstream 1290 73754013 ~ 73761732 (+) True LOC110530531
XM_036986184.1 mRNA downstream 18159 73770882 ~ 73793820 (+) False si:ch1073-82l19.1
XM_021613696.2 mRNA downstream 82107 73834830 ~ 73837375 (+) False LOC110530534
XM_036986189.1 mRNA downstream 82169 73834892 ~ 73837375 (+) True LOC110530534
XR_005052951.1 mRNA downstream 91925 73844648 ~ 73859462 (+) False LOC110530535
TU846223 other upstream 31794 73719716 ~ 73720650 (+) True G745489
TU846133 other upstream 157206 73593637 ~ 73595238 (+) True G745410
TU845764 other upstream 501948 73249424 ~ 73250496 (+) True G745083
TU845352 other upstream 884062 72867101 ~ 72868382 (+) True G744697
TU845350 other upstream 887741 72862256 ~ 72864703 (+) True G744696
TU846883 other downstream 1199962 74952685 ~ 74953654 (+) False G746052
TU846909 other downstream 1261921 75014644 ~ 75033896 (+) False nedd8
TU846908 other downstream 1270441 75023164 ~ 75033896 (+) False nedd8
TU846907 other downstream 1279207 75031930 ~ 75033896 (+) True nedd8
TU847942 other downstream 1575049 75327772 ~ 75328195 (+) True G746936

Expression Profile