RNA id: TU846304


Basic Information

Item Value
RNA id TU846304
length 4664
lncRNA type antisense_over
GC content 0.44
exon number 3
gene id G745557
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 73870430 ~ 73882450 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtacgggggcggggctgccttaatcaacaccCATGTATAATTGTTGTgcattctcaatggacattgttaattcgagtgcgttcgtaaattcgctctggctatctactctgatttcagagcactctcgtctgagtgtgccagagtgcagaataactgttgaatttacgaacactcaacaccctttgaatatggccggtgtcagtaataaacgtcggcaaaaagcactattaaattgttgccagcagcacagttagtcaccaaagctctggataacatgaaaacactCTAACCAGCTATATTAGCGgcgagtgaggtgttctctcatttgtgtctggaagtagctagtaaGCTAGcaaactttagccagttagcttggatgCTTTACTGCCGTTGTCAAAACGCTTGGATCAACCCTTCTCCTCGGTCAAAGCgtccagtgtgtgctctgaaattacaaacggacaatcttacaacctctgaatttacgaacacccagagcacactctggcactccagattgaatttacgaacacacctgaAGTCGTAAGATGTCTAGCTAGCAATGttttatgctaacaagctagcaagaggttacATAGCAACAGCAttaacttccggtagacaggctAAGCcctagtacgctcaactgaaaggatacagTTCgattacagtatactaaaatgaactaatattttatagtatatactcattaagtatgtggtatacagtatgttagtatggatATTCGAACACAGCTCATGATTGTAGGTTGGAATGGTTTGCTCAAACTGTATGACCTATCAAAGTTACGGTAATGAAAATAGACTTTCCATTGGTTCCGTATAGCCTGTCGAGCACGGCGCCCAGAGTCTCCCACTAGATCCGCTTTCTCTGTGTTGAGGCCAGAAACACACACCATCTTATCTGATCCAAAGCTGATATGGAAGACATTTCCATGGATCTGGTGTAGATACATGTGAGGGAGTTTAGCATCCATATCAAATAAATTGCCCACAAGAGGCATAGCTCGTGGTCCTGGAGGAAAGTTGGTGGGCTTCCTGTTCTTTAGGTAGTCAGTGACCAGAAAGAAGATGCAGAGGAACACCAGTATACCCTTAATGCCCAGTCCCTCCAACACAGACTGGAGTAACATGGTGAGGGTGGCTTAAAAACAGAAGGAAGATCAAGGTTAAAGTAAAATCCTTGGGGAAAAAATTTAAACCGCGAGGTTATGCTTTTTAAAAAGAATAAACCGTCCCTCGAGTGAGCCTCTTTCCCACTTACAGATTCCTCAATGACTGCTGGGGTCGGGGGATTCAAAACTCCACTATCAAACTGATTGGAGGGAGAGAAACCGATAAAGAGCCATACAAAAGAATCACATGGGATTGATCAGTGATGGCCAAAGTCCAGagcacctgtatttgtggagccCCATTCTGGTGCCGTCTGAATAGCTGAAGTGATCACATGAGACGAACTAGCaagaaatgtaaataaaacatgcATTTGTTCTGTTGTACAGAATTGTGACTTTAATCAAACAATGCTGTAAGATTAGATATTTTCAAAATGCTAGAAGGGTTACGTTCAAAGTACAAATTACTTaaaccaggggcgcaactttggttttagaagtgggggggacataacttttttaaaattattattattattattttctatcCAGTCAGATAAACATTCCAAAAAGTctacccgaccgctcggaggcatccgcatggtcctaaaacACACCgctgcctcgttttgtatcacattccaatgataaaactggggggacaaaaatgtaatttcagaatatgggcacattgaagctgttcccAGTGAAATGTGCGCTCCTGAATTaaactattaaaggcccagtgcagtcaataATGTGATTTCCATGtgtttatatacactgctcaaaaaaataaagggaacactaaaataacagatctgaatgaatgaaatattcttattaaatactgttttctttacatagttgaatgtggtgacaaaaaaatcacacaaaaattatcaatggaaatcaaatttatcaacccatggaggtctggatttggattcacactcaaaattaaagtggaaaaccacactacaggctgatccaactttgatgtaatgtccttaaaacaagtcaaaatgaggctcagtagtgtgtgtggactCTACGTGCCTgaatgacctccctacaatgcctgggcatgctcctgatgaggtggcggatggtctcctgagggatctcctcccagacctggactaaagcatccgccaactcttggacagtctgtggtgcaatgtggtggatgttggtggatggagcgagacacgatgtcccagatgtgctcaattggattcaggtctggggaatgggcgggccagtccatagcatcaatgccttcctcttgcaggaactgctgacacactccagccacatgaggtctagcattgtcttgcattaggaggaacccaaggCCAACCGCactagcatatggtctcacaaggggtctgaggatctattatcggtacctaatggcagtcaggctacctctggcgagcacatggagggctgtgcggccccccaaagaaatgccaccccacaccatgactgacccaccgccaaaccggtcatgctggaggatgttgcaggcagcagaacgttctccacggcgtctccagactgtcatgtctgtcacgtgctcagtgtgaacctgctttcatatgtgaagagcacagggcgccagtggcgaatttgccaatcttggtgttctctggcaaatgccaaacgtcctgcacggtgttgggctgtaagcacaacccccacctgtggacgtctggccctcataccaccctcatggagtctgtttttgaccgtttgagcagacacatgcacatttgtggtctgctggaggtcattttgcagggctctggcagtgctcctcctgctcctccttgcacaaatgcggaggtagcagtcctgctgctgggttgtttcccctcctacggcctcctccacgtctcctgatgtactggcctgtctcctggtagcgcctccatgctctggacactacgctgacagacacagcaaaccttcttgccacagctcgcattgatgtgccatcctggatgagctgcactgagccacttgtgtgggttgtagactccgtctcatgctaccactagagtgaaagcaccgccagcattcaaaagtgaccaaaacatcagccaggaagcataggaactgagaagtggtctgtgattatcacctgcagaaccactcctttattgggggatgtcttgctaattgcctataatttccacctgttgtctattccatttgcacaacagcatgtgaatgtcacgccctggtcttagtattttgtgttttctttatttatttggtcaggccagggtgtgacatgggttatttatgtggtgtgttttgtcttggggttttggtaggtattgggattgtggtatagtggggttgtttagaaaagtctatggttgcctgaagtggttctcaatcagaggcaggtgtttatcgttgtctctgattgggaaccatatttaggcataTTTAGGCAGTCATATTCTTTGAGTGGGGTAggtgattgttcctgtcgctATGTTTGTATGTTTATTGGTTTTGTACTGTTCAtgtttcatctttattaaacttgaatagaaaccacgctgcattttggtccgcctctccttcgacggaagaaaaccctAACGGTGAAAttgattgtcaatcagtgttgcttcctaagtggacagtttgatttcacagaagtgtgattgacttggagttacattgtgttgtttaagtgttccttttatttttttgagcagtgtatatatataggtTGGGTTGATATTGTgcaaattatgataatgcccttttagtgtgagAGCTGTTTGTAAAGACAGCCTGAAATTTCAGTCTGTTTTGGTGGGAGAgagttttggctttccatggtgacatcaccattcagtaaattagttaatagacaataacagctaaattcttgcttgagaaattgctatttgctaagaagttatttttgtttatttttgaccattttaattgaaaacaatcacagtaaggtacttaattgttacccagaaatgatttgatattgagataaaaatggctgcatttgaCCTTTACGAAAGGGGGGACACTGTAAATATCATACTGTGTATGCATTATGTTAAGCATGCAGACAGTGCTCAGTAATTCAGTATATCATACAatctgccgttgtgcccttgaccTGAATCTTCTCCAGTGGCGCTGCACCATGGCTGACCCTGTGCTTCCAACCCCTCGAGGGTATGTTTGACTTGGGAGGGGGTAGGGTTAAAAgcaaaaagacagatttccatATGGACTGTAGGAAAATGGACAATAAAATGTTTTCCTCTTCTCCAAAACGGAACTATAATGGTGGTGAACCATCACCATGTGGAGGCACAGATAGTGAAGGGTTTAGGGGACTGGATGGCCACTCCCTGGGGCTCCAGGCTTGGTGGTTCCTCTCCAGGGGATGTAGAGATGGTGAACCTCTGGAGGAGGGAGGTGAAAAAGAGGAAGAGCTCCATGCGGGCCAGCGACTGCCCCAGACAAGCCCTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU846277 lncRNA upstream 59008 73809963 ~ 73811422 (+) True G745534
TU846254 lncRNA upstream 98578 73770907 ~ 73771852 (+) True si:ch1073-82l19.1
TU846242 lncRNA upstream 116565 73753604 ~ 73753865 (+) True G745501
TU846241 lncRNA upstream 117707 73752444 ~ 73752723 (+) True G745500
TU846240 lncRNA upstream 118968 73751152 ~ 73751462 (+) True G745499
TU846316 lncRNA downstream 9188 73891638 ~ 73892041 (+) True G745568
TU846344 lncRNA downstream 51045 73933495 ~ 73933754 (+) True G745594
TU846345 lncRNA downstream 52858 73935308 ~ 73935597 (+) True G745595
TU846339 lncRNA downstream 54059 73936509 ~ 73936859 (+) True G745589
TU846340 lncRNA downstream 54498 73936948 ~ 73937684 (+) True G745590
XM_021613698.2 mRNA upstream 8224 73844649 ~ 73862206 (+) False LOC110530535
XM_036986190.1 mRNA upstream 8224 73844649 ~ 73862206 (+) True LOC110530535
XR_002474546.2 mRNA upstream 9174 73844648 ~ 73861256 (+) False LOC110530535
XR_005052950.1 mRNA upstream 9261 73844648 ~ 73861169 (+) False LOC110530535
XM_036986191.1 mRNA upstream 10159 73844648 ~ 73860271 (+) False LOC110530535
XM_021613706.2 mRNA downstream 27328 73909778 ~ 73917998 (+) True LOC110530540
XM_021613709.2 mRNA downstream 41859 73924309 ~ 73931497 (+) False LOC110530541
XM_021613708.2 mRNA downstream 41871 73924321 ~ 73931497 (+) True LOC110530541
XM_021613713.2 mRNA downstream 57644 73940094 ~ 73951207 (+) False LOC110530543
XM_021613716.2 mRNA downstream 58518 73940968 ~ 73950958 (+) False LOC110530543
TU846223 other upstream 149780 73719716 ~ 73720650 (+) True G745489
TU846133 other upstream 275192 73593637 ~ 73595238 (+) True G745410
TU845764 other upstream 619934 73249424 ~ 73250496 (+) True G745083
TU845352 other upstream 1002048 72867101 ~ 72868382 (+) True G744697
TU845350 other upstream 1005727 72862256 ~ 72864703 (+) True G744696
TU846883 other downstream 1070235 74952685 ~ 74953654 (+) False G746052
TU846909 other downstream 1132194 75014644 ~ 75033896 (+) False nedd8
TU846908 other downstream 1140714 75023164 ~ 75033896 (+) False nedd8
TU846907 other downstream 1149480 75031930 ~ 75033896 (+) True nedd8
TU847942 other downstream 1445322 75327772 ~ 75328195 (+) True G746936

Expression Profile