RNA id: TU846345



Basic Information


Item Value
RNA id TU846345
length 290
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G745595
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 73935308 ~ 73935597 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ccggtacagagtcaatgtggaggctttatacagggcataccggtacagagtcaatgtggaggctatatacagggcatgccggtacagagtcaatgtggaggctttatacagggcataccggtacagagtcaatgtggaggctttatacagggcataccggtacagagtcaatgtggaggctatatacagggcatgccggtacagagtcaatgtggaggctttatacagggcataccggtacagagtcaatgtggaggctatatacagggcataccggtacagagtcaatg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU846344 lncRNA upstream 1554 73933495 ~ 73933754 (+) True G745594
TU846316 lncRNA upstream 43267 73891638 ~ 73892041 (+) True G745568
TU846304 lncRNA upstream 52858 73870430 ~ 73882450 (+) False G745557
TU846302 lncRNA upstream 52858 73876298 ~ 73882450 (+) True G745557
TU846277 lncRNA upstream 123886 73809963 ~ 73811422 (+) True G745534
TU846339 lncRNA downstream 912 73936509 ~ 73936859 (+) True G745589
TU846340 lncRNA downstream 1351 73936948 ~ 73937684 (+) True G745590
TU846335 lncRNA downstream 2743 73938340 ~ 73939164 (+) True G745585
TU846347 lncRNA downstream 9431 73945028 ~ 73945294 (+) True G745597
TU846350 lncRNA downstream 28413 73964010 ~ 73964227 (+) True G745600
XM_021613709.2 mRNA upstream 3811 73924309 ~ 73931497 (+) False LOC110530541
XM_021613708.2 mRNA upstream 3811 73924321 ~ 73931497 (+) True LOC110530541
XM_021613706.2 mRNA upstream 17310 73909778 ~ 73917998 (+) True LOC110530540
XM_021613698.2 mRNA upstream 73102 73844649 ~ 73862206 (+) False LOC110530535
XM_021613713.2 mRNA downstream 4497 73940094 ~ 73951207 (+) False LOC110530543
XM_021613716.2 mRNA downstream 5371 73940968 ~ 73950958 (+) False LOC110530543
XM_021613712.2 mRNA downstream 5372 73940969 ~ 73951207 (+) False LOC110530543
XM_021613715.2 mRNA downstream 5373 73940970 ~ 73951207 (+) True LOC110530543
NM_001124277.1 mRNA downstream 39059 73974656 ~ 73981179 (+) True prdx1
TU846223 other upstream 214658 73719716 ~ 73720650 (+) True G745489
TU846133 other upstream 340070 73593637 ~ 73595238 (+) True G745410
TU845764 other upstream 684812 73249424 ~ 73250496 (+) True G745083
TU845352 other upstream 1066926 72867101 ~ 72868382 (+) True G744697
TU845350 other upstream 1070605 72862256 ~ 72864703 (+) True G744696
TU846883 other downstream 1017088 74952685 ~ 74953654 (+) False G746052
TU846909 other downstream 1079047 75014644 ~ 75033896 (+) False nedd8
TU846908 other downstream 1087567 75023164 ~ 75033896 (+) False nedd8
TU846907 other downstream 1096333 75031930 ~ 75033896 (+) True nedd8
TU847942 other downstream 1392175 75327772 ~ 75328195 (+) True G746936

Expression Profile