RNA id: TU846383



Basic Information


Item Value
RNA id TU846383
length 372
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G745633
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 74029883 ~ 74030254 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ggatcttccTGTACTTAGctctcttcttctttccctcgatcctgactagtctcagtcTCTactgcagaaaaacatcccctcagcatgatgctgccaccaccatgctttaccgtagggatggtgccaggtttcctccagacgtgacgcttggcattcagaggccaaagagttcaatcttggtttcatccgaccagagaatattgtttctcatggtctgagttctttaggtggcttttggaaaactccaagtgggctgtcatctgccttttactgaggagtggcttccatctgggcagtctaccataaagggctgataggtggagtgctgcagagatggttgtccttctgaaaggttattccatctccaaagag

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU846373 lncRNA upstream 13449 74015890 ~ 74016434 (+) True G745623
TU846362 lncRNA upstream 23901 74005630 ~ 74005982 (+) True G745612
TU846358 lncRNA upstream 38672 73989221 ~ 73991211 (+) True zte38
TU846367 lncRNA upstream 41207 73988477 ~ 73988676 (+) True G745617
TU846359 lncRNA upstream 47291 73981805 ~ 73982592 (+) True G745609
TU846395 lncRNA downstream 21134 74051388 ~ 74052113 (+) True G745643
TU846397 lncRNA downstream 22845 74053099 ~ 74097615 (+) False G745645
TU846402 lncRNA downstream 44697 74074951 ~ 74200709 (+) False G745646
TU846398 lncRNA downstream 66308 74096562 ~ 74101878 (+) True G745645
TU846414 lncRNA downstream 75014 74105268 ~ 74115014 (+) True G745655
XM_021613729.2 mRNA upstream 39968 73982708 ~ 73989915 (+) False zte38
XM_036986193.1 mRNA upstream 39968 73982709 ~ 73989915 (+) False zte38
NM_001124277.1 mRNA upstream 48704 73974656 ~ 73981179 (+) True prdx1
XM_021613712.2 mRNA upstream 78676 73940969 ~ 73951207 (+) False LOC110530543
XM_021613752.2 mRNA downstream 197857 74228111 ~ 74230113 (+) True LOC110530564
XM_021613751.2 mRNA downstream 214147 74244401 ~ 74247287 (+) True LOC110530563
XR_005052952.1 mRNA downstream 245072 74275326 ~ 74279768 (+) True LOC118965552
XM_021613761.2 mRNA downstream 337883 74368137 ~ 74376773 (+) False si:dkeyp-66d1.7
XM_036986227.1 mRNA downstream 343199 74373453 ~ 74376776 (+) True si:dkeyp-66d1.7
TU846223 other upstream 309233 73719716 ~ 73720650 (+) True G745489
TU846133 other upstream 434645 73593637 ~ 73595238 (+) True G745410
TU845764 other upstream 779387 73249424 ~ 73250496 (+) True G745083
TU845352 other upstream 1161501 72867101 ~ 72868382 (+) True G744697
TU845350 other upstream 1165180 72862256 ~ 72864703 (+) True G744696
TU846883 other downstream 922431 74952685 ~ 74953654 (+) False G746052
TU846909 other downstream 984390 75014644 ~ 75033896 (+) False nedd8
TU846908 other downstream 992910 75023164 ~ 75033896 (+) False nedd8
TU846907 other downstream 1001676 75031930 ~ 75033896 (+) True nedd8
TU847942 other downstream 1297518 75327772 ~ 75328195 (+) True G746936

Expression Profile