RNA id: TU846405


Basic Information

Item Value
RNA id TU846405
length 1341
lncRNA type read_through
GC content 0.46
exon number 2
gene id G745646
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 74074951 ~ 74200709 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATATAAATAATATGGTTTTATGATTTTGTGGTAGAAATATAAAATGTTAGTAGATGTAAATAAATAGGTTATTAAAAAAAGTGAGGATCCGTGAACAGTGAAACATGAAAACCATTTCACAAATCAATGAGGAGGAAAAGGTTGTCAACATTTCTCAAAATACTTTCTAAACCAAAATTTACATAGAAAGTGTTTCCGAAGCATAACGCAATTATGTTCCATCTGTTCTGAGACTATATTAAACTTGTGTGTGGATCCCCAGAGTATGCAGGTGCCAGGTGTGGAGACACTGCACTCTCTCCTATGTGAGTTCTCTGATGTGATGTCATATTGGAACGCTGGGTGAAGCATTTCCCACACTGTGTGCACTCGAAGGGCTTCTCCCCACTGTGGACCACAGCATGTCTGATCAAGTTGCACTGCTTGGTAAAACTCCTGCCACACTGTTCACAGGTGTAcggtttctctccggtgtgaCTCCGGAGGTGTACTTTGAGCTGGCAGAGACGCTGGAAGCTCTTCCCACAGAAGGTGCAGCTGAAACGCCTCTCGGTGGTGCCGCCTGATCTCCACTGAGTCCTCATTCTCTTCACCATGTTAAAACTACTGTGACTCAGGCTGTATCCTGagaaggtggaggtggtggtcaTGCTTGACCCTGTCGTGCACTCACTCAATCTCACTGCTCTGTCCCTCTGGCATCTGTTGTCTAGTCTCATCAGCCAATGTCCTGACATGTATTTTCATGTGTTTTGCTGCACTGAACATGTTagcatgtggtttccatataGAAAAGTGAAGCGATGGCCCTACATCCTCTGTCATAGTAGGAACAGATGGCAGCCCACTATGAGATGGGACCATTGAGTACTCTGAGAGTACTCTTCTGTGGAATGAAAGGAGAAATCTGGGTGGCCATCAGGGTCAGTGTCTCTGCCTGGATCCACAGAGGTCAACAGCTGCCCACCAGACTCATCCATAACAAACTGGACAGGTCCTGCCAGGGTCGTGGTCTGTTTCAGCTCCTCATCCTTCACTATGTCTAGTGAGTCCTCGTCCTCGGCTGGCCGGTGCTGCTCTGTACTGAACACCTCTGTAGATGCGAGCCGGGGTGTTCCTGGTTCCTCTGGACGATCAGAATTGGGGTAATGTTCCACTGAGTCTCTGGGAGATATATTGGGTTGTGTGATGAAGTCCTCATCACGGTGCCGTTGCTCAAAGGATGGTGGTTTCCCAGGCTTGGAACCAGACTCTAAAGATTTGGGCATAAATATTAAGAAAcattacaaatgttttttttgccaaAATCTTTAGAATTTAGGACTACAAGCGAACTAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU846414 lncRNA upstream 18733 74105268 ~ 74115014 (+) True G745655
TU846398 lncRNA upstream 31869 74096562 ~ 74101878 (+) True G745645
TU846397 lncRNA upstream 36132 74053099 ~ 74097615 (+) False G745645
TU846395 lncRNA upstream 81634 74051388 ~ 74052113 (+) True G745643
TU846383 lncRNA upstream 103493 74029883 ~ 74030254 (+) True G745633
TU846454 lncRNA downstream 11224 74209489 ~ 74211050 (+) True G745689
TU846506 lncRNA downstream 20333 74218598 ~ 74219954 (+) True G745737
TU846517 lncRNA downstream 50088 74248353 ~ 74249745 (+) True G745746
TU846569 lncRNA downstream 104841 74303106 ~ 74308955 (+) False G745795
TU846570 lncRNA downstream 104841 74303106 ~ 74304882 (+) False G745795
XM_021613729.2 mRNA upstream 143832 73982708 ~ 73989915 (+) False zte38
XM_036986193.1 mRNA upstream 143832 73982709 ~ 73989915 (+) False zte38
NM_001124277.1 mRNA upstream 152568 73974656 ~ 73981179 (+) True prdx1
XM_021613712.2 mRNA upstream 182540 73940969 ~ 73951207 (+) False LOC110530543
XM_021613752.2 mRNA downstream 29846 74228111 ~ 74230113 (+) True LOC110530564
XM_021613751.2 mRNA downstream 46136 74244401 ~ 74247287 (+) True LOC110530563
XR_005052952.1 mRNA downstream 77061 74275326 ~ 74279768 (+) True LOC118965552
XM_021613761.2 mRNA downstream 169872 74368137 ~ 74376773 (+) False si:dkeyp-66d1.7
XM_036986227.1 mRNA downstream 175188 74373453 ~ 74376776 (+) True si:dkeyp-66d1.7
TU846223 other upstream 413097 73719716 ~ 73720650 (+) True G745489
TU846133 other upstream 538509 73593637 ~ 73595238 (+) True G745410
TU845764 other upstream 883251 73249424 ~ 73250496 (+) True G745083
TU845352 other upstream 1265365 72867101 ~ 72868382 (+) True G744697
TU845350 other upstream 1269044 72862256 ~ 72864703 (+) True G744696
TU846883 other downstream 754420 74952685 ~ 74953654 (+) False G746052
TU846909 other downstream 816379 75014644 ~ 75033896 (+) False nedd8
TU846908 other downstream 824899 75023164 ~ 75033896 (+) False nedd8
TU846907 other downstream 833665 75031930 ~ 75033896 (+) True nedd8
TU847942 other downstream 1129507 75327772 ~ 75328195 (+) True G746936

Expression Profile