RNA id: TU846570



Basic Information


Item Value
RNA id TU846570
length 1057
lncRNA type antisense_over
GC content 0.47
exon number 5
gene id G745795
representative False

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 74303106 ~ 74308955 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CCGGCTGGCTACTAGGAAAATTCGAGCTTTGATGAACTTCCACTGCGATTTTGTCCATGTGGAATATTCTTTGGAAACGTAATCCCCCAGATCGAAAGCGGGGGACACTGCCTTGACCAGGCGTACTGCTGTGCGTACGCAGAAAGACTCCCTCTGGGTGCTGTTGGGTGGGACCACGCCCTGAACCCAGAGATAAGAGTACAAATATGTGCTCTCGTTTGGCAGCTCATCTGGCTTCTTGCACTGGCTCTGGGTGAGGTTGGTGGCTGTTCCCGTTAAATTAGCCAGGAGATATTGGACCAGATAGGTCAGTGCGTTAGCCTGATGGGACGACTTGGCAACACCAACGTAGTACTGGGGTGGGTTGGGCTGGAGGATGTCCTTCAGTTCTGGGGCCATCACTGCCTGAAACCAGCTGTTGTTGGATCTAACCAGAAACCCATACAGCATCTGGgtcacTGTTTTGGGGTCTGCATTGATTTTGTTTACTTGGGAGTTGTTTCCCCCAGCCTGCTTGAAGAGAGCGCGGGCAACTGCAGTAGCCACCTCGGTAAGAGACTTTGCAGTATCAGTCACAAACTCTAGCTGTTCCTCTGGACTCAAGTTAGATGGATAAGTCAGGTTCAGGTGGGCAGCATTGTCATAAAAACTCTCATAATACCTGCGCATGGGTAAACAAAAatagctgaagttggagacttgtatctccctcactaactttaaacatcagctatctgtgcAGCTCACCGATCGcagcagctgtacacagcccatctgtaaatagcccatccaactacctacctcatccccatattgtttttatttacttttttgcacatcagtatttctacttgcacatcatcaactgcacatctgtcactccagtgttaattgctaaattgtaattacttcaccactatggcctatttattgccttacctccttactccatttgcacacactgtatatacagtggggcaaaaaggtatttagtcagccaccaattgtgcaagttctcccacttaaatagatgagagaggcctgtaaatttcatcac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU846517 lncRNA upstream 53361 74248353 ~ 74249745 (+) True G745746
TU846506 lncRNA upstream 83152 74218598 ~ 74219954 (+) True G745737
TU846454 lncRNA upstream 92056 74209489 ~ 74211050 (+) True G745689
TU846405 lncRNA upstream 104841 74133747 ~ 74198265 (+) True G745646
TU846414 lncRNA upstream 188092 74105268 ~ 74115014 (+) True G745655
TU846571 lncRNA downstream 1376 74306258 ~ 74308955 (+) True G745795
TU846573 lncRNA downstream 7102 74311984 ~ 74312241 (+) True G745796
TU846576 lncRNA downstream 8633 74313515 ~ 74313778 (+) True G745799
TU846577 lncRNA downstream 9692 74314574 ~ 74315358 (+) True G745800
TU846578 lncRNA downstream 10536 74315418 ~ 74315636 (+) True G745801
XR_005052952.1 mRNA upstream 23338 74275326 ~ 74279768 (+) True LOC118965552
XM_021613751.2 mRNA upstream 55819 74244401 ~ 74247287 (+) True LOC110530563
XM_021613752.2 mRNA upstream 72993 74228111 ~ 74230113 (+) True LOC110530564
XM_021613729.2 mRNA upstream 313191 73982708 ~ 73989915 (+) False zte38
XM_021613761.2 mRNA downstream 63255 74368137 ~ 74376773 (+) False si:dkeyp-66d1.7
XM_036986227.1 mRNA downstream 68571 74373453 ~ 74376776 (+) True si:dkeyp-66d1.7
XM_036986222.1 mRNA downstream 71965 74376847 ~ 74382998 (+) True ftr66
XM_021613764.2 mRNA downstream 103503 74408385 ~ 74413205 (+) False ltb4r2b
XM_021613770.2 mRNA downstream 119565 74424447 ~ 74428142 (+) True sdr39u1
TU846223 other upstream 582456 73719716 ~ 73720650 (+) True G745489
TU846133 other upstream 707868 73593637 ~ 73595238 (+) True G745410
TU845764 other upstream 1052610 73249424 ~ 73250496 (+) True G745083
TU845352 other upstream 1434724 72867101 ~ 72868382 (+) True G744697
TU845350 other upstream 1438403 72862256 ~ 72864703 (+) True G744696
TU846883 other downstream 647803 74952685 ~ 74953654 (+) False G746052
TU846909 other downstream 709762 75014644 ~ 75033896 (+) False nedd8
TU846908 other downstream 718282 75023164 ~ 75033896 (+) False nedd8
TU846907 other downstream 727048 75031930 ~ 75033896 (+) True nedd8
TU847942 other downstream 1022890 75327772 ~ 75328195 (+) True G746936

Expression Profile