RNA id: TU846581



Basic Information


Item Value
RNA id TU846581
length 244
lncRNA type inter_gene
GC content 0.58
exon number 1
gene id G745804
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 74319445 ~ 74319688 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ACATGTCCTGGTGAGAACGGACAACACCACAGTGGTGGTTTACATCAACCATCAGGGTGGACTGAGGTCCCACCGCCTCAATTTTACAGCACGGGAGCGCCATCTCTGGGTGGCAGCGGGTATGCTCTCGAGGGAGTGCCAGCCACCTTGGGACTGGAGCTTACATCCTGTGGGACAAGTTAGGGTGGGTGCAGATGGACCTGTTTGCCTCCCTGGGCAATGCACACTGCCCCCTGTGGTACTC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU846580 lncRNA upstream 1230 74318004 ~ 74318215 (+) True G745803
TU846578 lncRNA upstream 3809 74315418 ~ 74315636 (+) True G745801
TU846577 lncRNA upstream 4087 74314574 ~ 74315358 (+) True G745800
TU846576 lncRNA upstream 5667 74313515 ~ 74313778 (+) True G745799
TU846573 lncRNA upstream 7204 74311984 ~ 74312241 (+) True G745796
TU846536 lncRNA downstream 3015 74322703 ~ 74325901 (+) True G745764
TU846587 lncRNA downstream 25215 74344903 ~ 74347740 (+) True G745810
TU846599 lncRNA downstream 42751 74362439 ~ 74362681 (+) True G745821
TU846604 lncRNA downstream 59318 74379006 ~ 74379661 (+) True G745826
TU846625 lncRNA downstream 88721 74408409 ~ 74411331 (+) True ltb4r2b
XR_005052952.1 mRNA upstream 39677 74275326 ~ 74279768 (+) True LOC118965552
XM_021613751.2 mRNA upstream 72158 74244401 ~ 74247287 (+) True LOC110530563
XM_021613752.2 mRNA upstream 89332 74228111 ~ 74230113 (+) True LOC110530564
XM_021613729.2 mRNA upstream 329530 73982708 ~ 73989915 (+) False zte38
XM_021613761.2 mRNA downstream 48449 74368137 ~ 74376773 (+) False si:dkeyp-66d1.7
XM_036986227.1 mRNA downstream 53765 74373453 ~ 74376776 (+) True si:dkeyp-66d1.7
XM_036986222.1 mRNA downstream 57159 74376847 ~ 74382998 (+) True ftr66
XM_021613764.2 mRNA downstream 88697 74408385 ~ 74413205 (+) False ltb4r2b
XM_021613770.2 mRNA downstream 104759 74424447 ~ 74428142 (+) True sdr39u1
TU846223 other upstream 598795 73719716 ~ 73720650 (+) True G745489
TU846133 other upstream 724207 73593637 ~ 73595238 (+) True G745410
TU845764 other upstream 1068949 73249424 ~ 73250496 (+) True G745083
TU845352 other upstream 1451063 72867101 ~ 72868382 (+) True G744697
TU845350 other upstream 1454742 72862256 ~ 72864703 (+) True G744696
TU846883 other downstream 632997 74952685 ~ 74953654 (+) False G746052
TU846909 other downstream 694956 75014644 ~ 75033896 (+) False nedd8
TU846908 other downstream 703476 75023164 ~ 75033896 (+) False nedd8
TU846907 other downstream 712242 75031930 ~ 75033896 (+) True nedd8
TU847942 other downstream 1008084 75327772 ~ 75328195 (+) True G746936

Expression Profile