RNA id: TU846536


Basic Information

Item Value
RNA id TU846536
length 2272
lncRNA type antisense_over
GC content 0.54
exon number 9
gene id G745764
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 74322703 ~ 74325901 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTCCTGCTTGTTGTCGACCACCAGCAGTGGCACAGACAGCAGGATGGCGCGGAAGCGTTCAACGGCCTCCTCAAAGCGGCCGGCAGTGGTGAGCTGGTAGCACTGCTGCAGGCGGGCGATGAGGTCAGAAAGACGAAGACCCACAGCAGGCAGCCCTTGCTTGGTCCCACAGTCCTTCCAGTTCCTCTGGGGGTTGCCACGCAGGCAGGGTAGAGAAGGCAGGCCCAGGTAGCAGGTCCGCCCGCGGGACAGAGTCTGCATGAACAGCTGCTTATAGGGCCCAAACTGCACCACCCCAACCTGGTCATGGAGTAACCTCATGGCGGTCTCAAATGAGCCTGCCAGGACGTGGTCCACAGGGAGCTGGGAGTTGTTGCACCACAGCTGTGTGGGGCTCATGCCCTTAGTGGGCGGGACAAAGAAACCATCTTCAGCCCCTCCTCCAGAGCCAGCTGACAACTCCAGCTCTGGAGGAAGGTCCAGATCTTCCTCCACCTCCcaacctcctccttcctccttcgcTGCACCTCCTTCCTCTCCTAATCCATCCTGGGCATCCATGAAGCCATCCTCATCCAGCTGAAGCTCTGCATCCTCTCCCCAGCCCTCTCCTCCTGGGGCATCAACATCCATGTCTGCAGCCATCTGACCAGCCTTCcCTTTGGCTGCAATGGCTCCCTCAAAGAAGCCCTTGGACACAGTAAGCAGGGGCCAGTTGGTATCCAGGGGGTTGATAGGTGGTGGTGGCTGCAGCAGCTGGGCATTGAGGTCCACCTCAGGGACAGTCTCCTTCTCCAGGTCAAATGTCTCTTTCAGGGATTCTGCCTCTTCGTCCATCCCGTGGGTAGCAGCAGTCAAATATGCCAGTGACTTCTGGCCACAGTTCTTCAGTATGCGAACTCTCTCGCTGACGTCCCCCAGATACAGAGCACCCTGGTAGTGTCCACTCATGTCCTTCCTGATCTCAGCGATCTTCATCATCTTGCGGAGCTTGGCCAGGTTACCAGTgatgaggtagaggaaggtgagCTTGTCGAAGTTCTTGGTCCTCTGGTAGCACATCTCCACGACCTGGTGGTGACCCTGCAGCAGCGCAGCCTCGCCCAGCCGCTCCCAGCAGCCCCTCTCATCCAGAGCCTTGGCAGCCTCCAACGCCACTTCAATGTTGCCACACTCCAGAGCTAGAGTGAAGCGGGTCTTCTCATCCTTGACAAAGTGCAGGGCTACCTCAGGGTAACCCTTCTTCTGCAGGTAGGAGATGATGGACTGGCCAACCAGCTTGGCGTTACGCACCATGTGCAAAACCTCTTCATATTTGCGGTTGACCAGGGCCAGTTTGAAGCGGTACTCCGTGGGGTCGATGGTCAGCACACGGGGCCTGCACTCACGGTCAAGACAGTAGACGCTGTTGCCTCTGACCCGGGTCACGTAGATGGGCAGGTCCAGAGTCCGGATGATACCATGATCACTACAGACAAGAGTAGAGTGTGATAAGAAAAGTTGGATACTCCCCTCGTCTCTCAAACGCATCACTGAAGGAGTAAACAGCTTTCATATTCCAGTATGTTCAAAAAGGACTAGGAAGGGAATGAATCAATATACTGTACTTCGAATATACTCTGAATAAAGTGTGCGTTAGTGGCGTCTTGTGCATTACCCTGAGGTGAGGGCGTATTTAATGTGGTTAGATGTGGTGTAAATGAAGACGCCACTCTCGTCCCAGGCTCCACTCTTCACACGGATGTTCTCATGGATGTTGCACAGACTCTCCAGCTTCCTGTTGCAGATCATAATTGCTGCAGAGGAAAGCAGAGATTTATCAACAAATTTAACAGCAGGTAAATCTGGGGTACTAGAGAGCGAGGGAACAGCTAAAAAGGGTGTAAATCTAGGATACATTGTTGACAACAGCTATAGAGAGTGAATCGTGGTAAGTTTAAAAACAGCAAGAGGGCCCAAAACCTTGACAGCCAAGCTGTAGAGAAAGTAGAGGACAGATAAGAGTGTAATCCTGATATTGGATCTGAGTGTGTTTAGAGTGTACTGTACGTACCGTGTTTAGCCAGCAGGGCCACGTGGCTGGTGTCAGCACTCCACACCACATACTTGACCTTGGCGATCTTCACGGTGGCCAGCGAGCGTTTCTGCTGCACGTCGAAGAGGGTGACCCCATCTGCGTCGCGCAGCAGCAGGGAGCCTGTCCCGGCGTAAAAGATCTCCTCACAGCTGGGCAcctgcaccttcttcacaatcTCATTCTTCAGGTTCTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU846581 lncRNA upstream 3015 74319445 ~ 74319688 (+) True G745804
TU846580 lncRNA upstream 4488 74318004 ~ 74318215 (+) True G745803
TU846578 lncRNA upstream 7067 74315418 ~ 74315636 (+) True G745801
TU846577 lncRNA upstream 7345 74314574 ~ 74315358 (+) True G745800
TU846576 lncRNA upstream 8925 74313515 ~ 74313778 (+) True G745799
TU846587 lncRNA downstream 19002 74344903 ~ 74347740 (+) True G745810
TU846599 lncRNA downstream 36538 74362439 ~ 74362681 (+) True G745821
TU846604 lncRNA downstream 53105 74379006 ~ 74379661 (+) True G745826
TU846625 lncRNA downstream 82508 74408409 ~ 74411331 (+) True ltb4r2b
TU846654 lncRNA downstream 153499 74479400 ~ 74480069 (+) True G745873
XR_005052952.1 mRNA upstream 42935 74275326 ~ 74279768 (+) True LOC118965552
XM_021613751.2 mRNA upstream 75416 74244401 ~ 74247287 (+) True LOC110530563
XM_021613752.2 mRNA upstream 92590 74228111 ~ 74230113 (+) True LOC110530564
XM_021613729.2 mRNA upstream 332788 73982708 ~ 73989915 (+) False zte38
XM_021613761.2 mRNA downstream 42236 74368137 ~ 74376773 (+) False si:dkeyp-66d1.7
XM_036986227.1 mRNA downstream 47552 74373453 ~ 74376776 (+) True si:dkeyp-66d1.7
XM_036986222.1 mRNA downstream 50946 74376847 ~ 74382998 (+) True ftr66
XM_021613764.2 mRNA downstream 82484 74408385 ~ 74413205 (+) False ltb4r2b
XM_021613770.2 mRNA downstream 98546 74424447 ~ 74428142 (+) True sdr39u1
TU846223 other upstream 602053 73719716 ~ 73720650 (+) True G745489
TU846133 other upstream 727465 73593637 ~ 73595238 (+) True G745410
TU845764 other upstream 1072207 73249424 ~ 73250496 (+) True G745083
TU845352 other upstream 1454321 72867101 ~ 72868382 (+) True G744697
TU845350 other upstream 1458000 72862256 ~ 72864703 (+) True G744696
TU846883 other downstream 626784 74952685 ~ 74953654 (+) False G746052
TU846909 other downstream 688743 75014644 ~ 75033896 (+) False nedd8
TU846908 other downstream 697263 75023164 ~ 75033896 (+) False nedd8
TU846907 other downstream 706029 75031930 ~ 75033896 (+) True nedd8
TU847942 other downstream 1001871 75327772 ~ 75328195 (+) True G746936

Expression Profile