RNA id: TU846587


Basic Information

Item Value
RNA id TU846587
length 2262
lncRNA type antisense_over
GC content 0.43
exon number 3
gene id G745810
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 74344903 ~ 74347740 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccatcattactttaagacatggtcggTCAATCcgtaaaatttcaagaactttgaaaaagtttattcaagtgcagttgcaaaacaaaatcaagcactatgatgaaactggctctcatgaggaccgccacaggaaaggaagaccaagagttacatctgcttcagaggataagttcattagagttatcagcctcagaaattacaaaTAAATTCTTCAGAGTTCAAacaacagacatctcaacatcaactgttcagaggagactgcgtgaatcaggccttcatggtcgaattgccgcaaagaacccactactaaaggacaccaattagaagagactggctttggccaagaaacacaagcaatggaaatgtgtcctttggtctggattccaaatgtgagattttttggttccaaccaccatgtctttgtgagacgcagagtaggtgaacagatgatctacgcatgtgtggttcccaccgtgaagtatggaggaggtggtgttatggtggTTTGCTGATGacgctgtcagtgatttatttagaattcaaagcaaacttaaccagcatggctacaacagcattatCCAACGAcacgccatcacatctggtttgcgcttagtgggactatcatgtttttcaacaggacagtgacccaacacacctccaggctgtgtaagggctatttgacaaagaaggagagtgatgagtgctgcatcagatgacctggcctccacaatcacctgacctcaacccaatagaggtttgggataaattggaccgcagattgaaagaaaagtagccaacaagtgctcagcataagactgttggaaaagcattccaggtgaaactggttgagaataccaagtgtgcaaagcttatcaaagcaaagggtggctatttgatatatatatattcgtaTCATTTTGATCACAAGAAAAACAGCAGGGTCACATACCAGTAGTGGTACTGGTTTCGATATAATCATGCGAAACAGTATTCTCTCATCATGGCCCAAATCCAATTTCGACATTGTGGTCACGGTGTCAGAAACCTTTTTTCCATAACTTGTAGTGTATAAAAAGCTAGGAGGGTTATAACCACAGTCACAAAAGAGTCCCACTACTGGACAGACGCCCCGGGATTCAGGGGACCGTCTTAGTCCCGATGGTTACTGACCGACCTTGGCTCTAGCCCCATGCGCAAACCAGAGCACCAACCTCGCTAACCTGTTTAAAAACTTGAATAATGTCAATTATAAATATATGTCACAATTGGCCACAGGACTGGTTCTTACATCTTGTGGATGTAACAATGTTTGAACCGACATCAAGAAAACTAGAGGTCAAATCAAGTGCACAGCCATATACCGTCTCTGGTACAACATAGTAGCTTTTGGGAAGATACTATATAACTAACCAAGGTAAAGTCAGTCTCTAAAAATCAGTTAGCCGTCTTATGATTATGAAATTAGAACGAGGTAAGTTTAACTCCTCGATTTTCTTTAAATAATTCACAAATGTACACTGGTTATGCAACCAACAATATTAATCTACACGCATGTTACATTAACAGTATTAATGATGAAAATGGCAAAATGTATAACTCTAAACGAGTGGTCAGAAACAACCTAATCAACCCCTGGGGTGTTGGTGTTACTTTATTGATTGAGTGGAACTGTGATGGTGGCTCAACACCCTTTGTTGGGCACGCAGCCCCATGATGATACTGCAGCTATGAAACAACTCAATCATCACTCAGCAACTCTCACAACAGAGAATCCTACTATCCTTGCTGTAGGGTTTATAACAATAATGCAAGGCACCATTTTAACCAATAGGCCAGTTCAACCAGTTCTACCATGAGGCTAAACAATGGTGAGTGTAAAAACGGACTCATAAGTCAAGCGCTAGTCatttgagctgtgtgtgtgggtatgctACTACCTGTACTATGAATGGAAAAGCTTACGAAAAACCAAAGCTATTAATTTAAAATCAGTGAAGTGATGGTTTGTTGTGCCACCCTTGACTGTGCCTTCTCTGTAGACACAGAAACATTTGTTGCGAGGAGAGCAGTGCAAACAGTCTCGTTCTCCTCCTTGTCTTGTGATCGATCGTCCTCTCTCATCATCCCCCCTCGCACACAGCTCCTAGCCTGTGCATCTATTGATCTGGCTGCTCTGACATCACATGATTGAGCACTGCTCTGCCGCTCCAGCCCCAGAGGCTCCTGGGAGATTCAGGGATTCCAGGTCAAAGTTCAGGCCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU846536 lncRNA upstream 19002 74322703 ~ 74325901 (+) True G745764
TU846581 lncRNA upstream 25215 74319445 ~ 74319688 (+) True G745804
TU846580 lncRNA upstream 26688 74318004 ~ 74318215 (+) True G745803
TU846578 lncRNA upstream 29267 74315418 ~ 74315636 (+) True G745801
TU846577 lncRNA upstream 29545 74314574 ~ 74315358 (+) True G745800
TU846599 lncRNA downstream 14699 74362439 ~ 74362681 (+) True G745821
TU846604 lncRNA downstream 31266 74379006 ~ 74379661 (+) True G745826
TU846625 lncRNA downstream 60669 74408409 ~ 74411331 (+) True ltb4r2b
TU846654 lncRNA downstream 131660 74479400 ~ 74480069 (+) True G745873
TU846535 lncRNA downstream 153731 74501471 ~ 74502888 (+) True G745763
XR_005052952.1 mRNA upstream 65135 74275326 ~ 74279768 (+) True LOC118965552
XM_021613751.2 mRNA upstream 97616 74244401 ~ 74247287 (+) True LOC110530563
XM_021613752.2 mRNA upstream 114790 74228111 ~ 74230113 (+) True LOC110530564
XM_021613729.2 mRNA upstream 354988 73982708 ~ 73989915 (+) False zte38
XM_021613761.2 mRNA downstream 20397 74368137 ~ 74376773 (+) False si:dkeyp-66d1.7
XM_036986227.1 mRNA downstream 25713 74373453 ~ 74376776 (+) True si:dkeyp-66d1.7
XM_036986222.1 mRNA downstream 29107 74376847 ~ 74382998 (+) True ftr66
XM_021613764.2 mRNA downstream 60645 74408385 ~ 74413205 (+) False ltb4r2b
XM_021613770.2 mRNA downstream 76707 74424447 ~ 74428142 (+) True sdr39u1
TU846223 other upstream 624253 73719716 ~ 73720650 (+) True G745489
TU846133 other upstream 749665 73593637 ~ 73595238 (+) True G745410
TU845764 other upstream 1094407 73249424 ~ 73250496 (+) True G745083
TU845352 other upstream 1476521 72867101 ~ 72868382 (+) True G744697
TU845350 other upstream 1480200 72862256 ~ 72864703 (+) True G744696
TU846883 other downstream 604945 74952685 ~ 74953654 (+) False G746052
TU846909 other downstream 666904 75014644 ~ 75033896 (+) False nedd8
TU846908 other downstream 675424 75023164 ~ 75033896 (+) False nedd8
TU846907 other downstream 684190 75031930 ~ 75033896 (+) True nedd8
TU847942 other downstream 980032 75327772 ~ 75328195 (+) True G746936

Expression Profile