RNA id: TU846535


Basic Information

Item Value
RNA id TU846535
length 1418
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G745763
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 74501471 ~ 74502888 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgacaaagcaaaaaaagttttttagaacattttgctaatttattaaaaatataaaacattgcaagtattcagaccctttactcagtactttgttgaagcaccttcagcagcaattacagccttgagtcttcttgggtgtgacgctacaagcttggcacacctgtattggggagttgcagatcctctcaagctctgtcaggttggatggggagcatggctgcacagctattttaggtctctccagagacgttcgatcaagttcaagtccgagctctggcggggccactcaaggacattcagagacttgtcccgaagccaatcctgcattgtcttggctgtgtgcttagggtcattgtccttttggaaggtgaacctttgccccagtctgaggtcctgagtgttctggaACAGtgtttcattaaggatctctctgtactttgcgccgtacatctttgccttgatcctgactagtctcccagtccctgctgctgaaaaacattcccacagcatgatgctgccaccaccatgcttcaccgtaggtacGGTGCCAGGTGtcttccagacgtgatgcttggcattcaggccaaagagttcaatcttggtttcagcagaccagagaatcttgtttctcatagtctgagagtctttaggtgcctttaggcaaactacaagcgggatgtcatgtgccttttactgagtggtggcttccatctggccactcttccataaaagcctgatttggtggagtgctgcagagatggttgtccttctggaaggttctcctatctccacagaggaactctagagcactgtcggagtgaccatcgggttcttggtcacctccctgaccaaggtccttctcccccgattgctccgtttggcagggcagccagctgtaggaagagtcttggtggttccatttaagaaagatggaggcAACTGTTTAGAAAGCACTTTCGCTACACCtgccataacatctgctaaatatgtgtatgtgaacaatacaatttgatttcttggggaccttcaatgctgcagaatatttttggtatccttcaccagatctgtgcctcaacacaatcctgtctcggagctctacggacaattccttcgacctcgtggcttggtttttgctctgacatgcaccgtctatggtgggaccttatataggcaggtgtgtgcctttccaaattatgtcaaatcaattgaatttaacacaggtgtactccaagttgtagaaacatgtcaagtatgatcaatggaaacaccattcacctgagcttaattttgattctcatagcaaagggtctgaatacttatgtaaacaaggtatttgatttttgtttttaataaattagcaaaaatgtataaacctgttttcactttgtcattatggggtattctgtgtagatttcTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU846654 lncRNA upstream 21402 74479400 ~ 74480069 (+) True G745873
TU846625 lncRNA upstream 90140 74408409 ~ 74411331 (+) True ltb4r2b
TU846604 lncRNA upstream 121810 74379006 ~ 74379661 (+) True G745826
TU846599 lncRNA upstream 138790 74362439 ~ 74362681 (+) True G745821
TU846587 lncRNA upstream 153731 74344903 ~ 74347740 (+) True G745810
TU846540 lncRNA downstream 98 74502986 ~ 74503510 (+) True G745766
TU846661 lncRNA downstream 1867 74504755 ~ 74505021 (+) True G745880
TU846665 lncRNA downstream 6528 74509416 ~ 74509726 (+) True G745884
TU846673 lncRNA downstream 19304 74522192 ~ 74522413 (+) True G745892
TU846674 lncRNA downstream 20076 74522964 ~ 74523164 (+) True G745893
XM_036986217.1 mRNA upstream 349 74480507 ~ 74501122 (+) False LOC110530582
XM_036986219.1 mRNA upstream 349 74480507 ~ 74501122 (+) False LOC110530582
XM_036986220.1 mRNA upstream 349 74480508 ~ 74501122 (+) False LOC110530582
XM_021613773.2 mRNA upstream 349 74480510 ~ 74501122 (+) False LOC110530582
XM_036986218.1 mRNA upstream 349 74481905 ~ 74501122 (+) False LOC110530582
XM_021613779.2 mRNA downstream 27786 74530674 ~ 74534017 (+) True LOC110530584
XM_036986228.1 mRNA downstream 194461 74697349 ~ 74712803 (+) True LOC110530591
XM_021613790.2 mRNA downstream 210202 74713090 ~ 74717411 (+) False LOC110530590
XM_021613791.2 mRNA downstream 210206 74713094 ~ 74717411 (+) True LOC110530590
XM_021614268.1 mRNA downstream 292528 74795416 ~ 74796285 (+) True LOC110530985
TU846223 other upstream 780821 73719716 ~ 73720650 (+) True G745489
TU846133 other upstream 906233 73593637 ~ 73595238 (+) True G745410
TU845764 other upstream 1250975 73249424 ~ 73250496 (+) True G745083
TU845352 other upstream 1633089 72867101 ~ 72868382 (+) True G744697
TU845350 other upstream 1636768 72862256 ~ 72864703 (+) True G744696
TU846883 other downstream 449797 74952685 ~ 74953654 (+) False G746052
TU846909 other downstream 511756 75014644 ~ 75033896 (+) False nedd8
TU846908 other downstream 520276 75023164 ~ 75033896 (+) False nedd8
TU846907 other downstream 529042 75031930 ~ 75033896 (+) True nedd8
TU847942 other downstream 824884 75327772 ~ 75328195 (+) True G746936

Expression Profile