RNA id: TU846665



Basic Information


Item Value
RNA id TU846665
length 311
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G745884
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 74509416 ~ 74509726 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gtgtagggacatcaggggtaaaattgcagacctgcacaaggctggggtgGGCTACAAATCagtaggcaagcagcttggtgagaaggcaacaactgttggcgcaattattagaaaatggaagaagttcaagatgacggtcaatcatcctcggtctggggctccatacaagatctcacctcgtggggcatcaatgatcatgaggaaggtgagggatcagcccagaactacatgggaggacctggtcaatgacctgaagagagctgggaccacagtctcaaagaaaaccattagtaacacaatacgccgtcatg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU846661 lncRNA upstream 4395 74504755 ~ 74505021 (+) True G745880
TU846540 lncRNA upstream 5906 74502986 ~ 74503510 (+) True G745766
TU846535 lncRNA upstream 6528 74501471 ~ 74502888 (+) True G745763
TU846654 lncRNA upstream 29347 74479400 ~ 74480069 (+) True G745873
TU846625 lncRNA upstream 98085 74408409 ~ 74411331 (+) True ltb4r2b
TU846673 lncRNA downstream 12466 74522192 ~ 74522413 (+) True G745892
TU846674 lncRNA downstream 13238 74522964 ~ 74523164 (+) True G745893
TU846679 lncRNA downstream 19391 74529117 ~ 74529349 (+) True G745898
TU846680 lncRNA downstream 19837 74529563 ~ 74529788 (+) True G745899
TU846531 lncRNA downstream 33113 74542839 ~ 74549712 (+) True G745760
XM_036986219.1 mRNA upstream 8294 74480507 ~ 74501122 (+) False LOC110530582
XM_021613779.2 mRNA downstream 20948 74530674 ~ 74534017 (+) True LOC110530584
XM_036986228.1 mRNA downstream 187623 74697349 ~ 74712803 (+) True LOC110530591
XM_021613790.2 mRNA downstream 203364 74713090 ~ 74717411 (+) False LOC110530590
XM_021613791.2 mRNA downstream 203368 74713094 ~ 74717411 (+) True LOC110530590
XM_021614268.1 mRNA downstream 285690 74795416 ~ 74796285 (+) True LOC110530985
TU846223 other upstream 788766 73719716 ~ 73720650 (+) True G745489
TU846133 other upstream 914178 73593637 ~ 73595238 (+) True G745410
TU845764 other upstream 1258920 73249424 ~ 73250496 (+) True G745083
TU845352 other upstream 1641034 72867101 ~ 72868382 (+) True G744697
TU845350 other upstream 1644713 72862256 ~ 72864703 (+) True G744696
TU846883 other downstream 442959 74952685 ~ 74953654 (+) False G746052
TU846909 other downstream 504918 75014644 ~ 75033896 (+) False nedd8
TU846908 other downstream 513438 75023164 ~ 75033896 (+) False nedd8
TU846907 other downstream 522204 75031930 ~ 75033896 (+) True nedd8
TU847942 other downstream 818046 75327772 ~ 75328195 (+) True G746936

Expression Profile