RNA id: TU846689



Basic Information


Item Value
RNA id TU846689
length 218
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G745908
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 74680337 ~ 74680554 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CCTCTCTGTTGTAAACAGGTCAAGGGTGACCTCGAGTGGCTGAATAATGCAATTACATTCTGTGAACTGCGTGTGTACCTTTGAAGGAAATTACAGAAGGGGGGGGGGTACCTATGTAAGAAtagcattcaacatcatagtgccctccagctcatcattaagctcagggcTCTGGGTCGGAACCCCTCCCTGAGCTACTGGGTCCTAGACTACCTGAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU846688 lncRNA upstream 794 74679330 ~ 74679543 (+) True G745907
TU846544 lncRNA upstream 37016 74628791 ~ 74643321 (+) True G745770
TU846531 lncRNA upstream 130625 74542839 ~ 74549712 (+) True G745760
TU846680 lncRNA upstream 150549 74529563 ~ 74529788 (+) True G745899
TU846679 lncRNA upstream 150988 74529117 ~ 74529349 (+) True G745898
TU846691 lncRNA downstream 1341 74681895 ~ 74682190 (+) True G745910
TU846701 lncRNA downstream 14158 74694712 ~ 74694912 (+) True G745920
TU846716 lncRNA downstream 47215 74727769 ~ 74728646 (+) True G745932
TU846742 lncRNA downstream 72734 74753288 ~ 74753974 (+) True G745950
TU846770 lncRNA downstream 100223 74780777 ~ 74782673 (+) True G745967
XM_021613779.2 mRNA upstream 146320 74530674 ~ 74534017 (+) True LOC110530584
XM_036986220.1 mRNA upstream 179215 74480508 ~ 74501122 (+) False LOC110530582
XM_036986228.1 mRNA downstream 16795 74697349 ~ 74712803 (+) True LOC110530591
XM_021613790.2 mRNA downstream 32536 74713090 ~ 74717411 (+) False LOC110530590
XM_021613791.2 mRNA downstream 32540 74713094 ~ 74717411 (+) True LOC110530590
XM_021614268.1 mRNA downstream 114862 74795416 ~ 74796285 (+) True LOC110530985
XM_021613807.2 mRNA downstream 124147 74804701 ~ 74812569 (+) False LOC110530598
TU846223 other upstream 959687 73719716 ~ 73720650 (+) True G745489
TU846133 other upstream 1085099 73593637 ~ 73595238 (+) True G745410
TU845764 other upstream 1429841 73249424 ~ 73250496 (+) True G745083
TU845352 other upstream 1811955 72867101 ~ 72868382 (+) True G744697
TU845350 other upstream 1815634 72862256 ~ 72864703 (+) True G744696
TU846883 other downstream 272131 74952685 ~ 74953654 (+) False G746052
TU846909 other downstream 334090 75014644 ~ 75033896 (+) False nedd8
TU846908 other downstream 342610 75023164 ~ 75033896 (+) False nedd8
TU846907 other downstream 351376 75031930 ~ 75033896 (+) True nedd8
TU847942 other downstream 647218 75327772 ~ 75328195 (+) True G746936

Expression Profile