RNA id: TU846878



Basic Information


Item Value
RNA id TU846878
length 491
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G746052
representative False

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 74952685 ~ 74953842 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CCTTCCACTGatgccatcaaggcaaaatgggaggaagaactagggACTGACATCTCGGTGGCAGACTGGGAAGAGAGCTTGGAGTATATCTACACATGCTCCATTAATTCCAGACATCGTCTCATACAATTCAAGGTATTACACAGATTACACTATTCCAAAACTAAACTGCATAGGATATTTCCTGACACATCCCCTACATGTGATAAATGTCAGGCTACGGAGGGTACACTACTCCACTGCTTTGCCCTATGCTCTAGCTTGCATGGTTATTGGAGTGGAATTTTTGGGATCCTCTCTGAAGTTTTGGAGACTTCAATAGATCCAGACCCGCTTCTGATAATCCTGGGAGTATCTGAGTCCCTAAACGGATTAAccaacccccaaaaacaactaaTCTCGTACGGTCTCATCTCGGCAAAAAAACTAATATTGTTGTTTTGGAAGAGGAGGGAAGCGCCCTCTACCAAATTATGGCTCAGTGAATTGGC

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU846877 lncRNA upstream 1580 74951307 ~ 74951584 (+) True G746051
TU846874 lncRNA upstream 8039 74944908 ~ 74945125 (+) True G746048
TU846871 lncRNA upstream 10082 74942882 ~ 74943082 (+) True G746045
TU846867 lncRNA upstream 14212 74938713 ~ 74938952 (+) True G746041
TU846840 lncRNA upstream 98225 74854709 ~ 74854939 (+) True G746014
TU846896 lncRNA downstream 12771 74966425 ~ 74966969 (+) True G746058
TU846898 lncRNA downstream 15418 74969072 ~ 74969326 (+) True G746060
TU846902 lncRNA downstream 18215 74971869 ~ 74972086 (+) True G746064
TU846929 lncRNA downstream 93510 75047164 ~ 75048317 (+) True G746089
TU846920 lncRNA downstream 116992 75070646 ~ 75072366 (+) True G746080
XM_021613814.2 mRNA upstream 60520 74890148 ~ 74892644 (+) True c8h14orf119
XM_021613816.2 mRNA upstream 60867 74889205 ~ 74892297 (+) False c8h14orf119
XM_021613808.2 mRNA upstream 109567 74822494 ~ 74843597 (+) False LOC110530599
XM_021613807.2 mRNA upstream 140595 74804701 ~ 74812569 (+) False LOC110530598
XM_021614268.1 mRNA upstream 156879 74795416 ~ 74796285 (+) True LOC110530985
XM_021613819.2 mRNA downstream 4536 74958190 ~ 74964449 (+) False homeza
XM_021613817.2 mRNA downstream 5585 74959239 ~ 74964449 (+) False homeza
XM_021613818.2 mRNA downstream 5587 74959241 ~ 74964449 (+) False homeza
XM_036986247.1 mRNA downstream 6184 74959838 ~ 74964449 (+) False homeza
XM_021613820.2 mRNA downstream 6242 74959896 ~ 74964449 (+) False homeza
TU846223 other upstream 1232514 73719716 ~ 73720650 (+) True G745489
TU846133 other upstream 1357926 73593637 ~ 73595238 (+) True G745410
TU845764 other upstream 1702668 73249424 ~ 73250496 (+) True G745083
TU845352 other upstream 2084782 72867101 ~ 72868382 (+) True G744697
TU845350 other upstream 2088461 72862256 ~ 72864703 (+) True G744696
TU846909 other downstream 60990 75014644 ~ 75033896 (+) False nedd8
TU846908 other downstream 69510 75023164 ~ 75033896 (+) False nedd8
TU846907 other downstream 78276 75031930 ~ 75033896 (+) True nedd8
TU847942 other downstream 374118 75327772 ~ 75328195 (+) True G746936
TU847837 other downstream 396554 75350208 ~ 75357157 (+) False LOC110530987

Expression Profile


TU846878 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 4.
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TU846878 Expression in each Bioproject

Bar chart with 9 bars.
TU846878 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 60.
End of interactive chart.