RNA id: TU847964


Basic Information

Item Value
RNA id TU847964
length 1927
RNA type TUCP
GC content 0.46
exon number 5
gene id G746951
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 75379450 ~ 75383243 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCGAAAGTTCTAAACACAATTCCTATCGGTTTGGCAATTTCCGGTCAGTCTAGTTGTTATCGACGATATAACGTTACTACCACTATGTCGCAGTTTTTTTACTAGGTGTCTTCGGGACTTGCCTCAAATTAATATTGTACATCGAATTGTTACATCAGCCTCCGAGACTCCAGCTAGCAAGAATGAAAAGGGGTTCAATATGTATATAGGAAGCTACATAGACAACTATGAAGGAAGTGTTCTGTGTATGCAAACCATGGAGATGAAGAGGGGGCTAGCCATGGAGCCAGTGGCTGTACAGGAGTACTGCACACTGAAGAATGTTAACTTCTTTCCGTGTGGCTTCGTAGTGCACCCAGATGCTCCGTGGTTAGGATCCTCTCCAGATGGAATCATATTTGATCCCAGTGTGAGACCACACTTTGGACTCTTAGAGGTCAAGTGCCCAAATGTATCAAGTTATGTTGACTGCCCTTACCTGAAGATACAGAATGGAGAGCTGAAGTTGAAGAGATCTCATGCTTACTACTAGCAGGTGCACCTCATAGTCACCTCAAGttcttgggagtatggctagacgGAAGCAGTGGCAAATTGCAAGAAAACCACCAACTCTTTAATGGCTGCGATGAGAGGGCGGCAAACCAAGATGGATGAAATTCATCCAGTCTCTTTGAGACATTGGCTGATGACTGCAAGAAAAAGGATTGCTTCTCTGAAAGAGCAAAGGAAATAGAAGAGCTGGTGTTCTGCCAACGACCAGAGCGGATTTCTTGCGTTATGCCACCACCCTGCCCCTTGACCCCCAACACGTCCAACTACAACCTCGTTCTGACAGACGACAGTTCAGTCCAACACTGCAAGAAGCCCCAGCCCaccctgacccccaggtcctgtgtAAAGAGGAAGAAACCCTCTATGTCCTGGCCTTTATTGTTGTTTGCTGCCCCAGCATCATCAGAAAGAAGACCCTTTCAACGATCGCTTTGAACGTAACAGCAATGTCTGGTGCTTACGACCGACTTTGATCTACAGTTAGGTCCACCATGGCCCAGCAGAGAATCATACGCAATGTGTCCTAGAGGTTAGTGAAGCGGACCAGCAACTGAGGGAAAACACATCTGGTTTGGATTGGGCCTGCAACCGGAGTGCATCACTGTCCTCACTGTCCTAGATGCCATCACCTGTTGTACCCTTGACCAAGGCATTTGCTCAACAAGCACTATAGTATGGCTGTCTGGAATAAAGCAGAAGACAAGATTCCATTGGACTCCAGTGTACATTGGACTGATAATAATGTAATCTTCTTCGTCATAGAAATGTCCCATGGAGACTAAACTGCCCATGGTCAAGAAACATGGTGATATGAAGGTTGGTGTGTTTGTGGACTACCCAGCTGGTCTGATCTCCTACAAGGCCCAGGTTCCAGACAGCACCATGGTCCACCTCTACACGTTCGAGGCCACCTTCACACAACCCCTCTATGCAGGGTTTAGAGTGAGCTCTCTGAAACTGGGTAGCCTCGTCCCCACAGTGCCTTCCAGGTGAAACATTGATGACATCTTGCCCTTTCCTTGTGTGCCACAAAAGATGATGAAAGGCTTGTGTACCCAAAGACCTAACAGCAAATGGCTTTACAAGTGTGTTTATCCTAGTGTGATATATCAATATTCTCTGAGAGCTCAGCGTTTTTCTTTTGCTCATCAAGCCCAGTATGTGTTATTCCTGTGCTAGTTTTAGAGTCTCTTGTGTTCTGCTAAGTGGCCTCTTGTTCTTTTTGTTGCTGAATATTTAGATGTCCTGTGACCTACCGGTATGCTCTCTTGTTGTTCAAGATGCACTACCTTAACATTGAGGGTTTTATTATGCTGTTTCTTTCTTATTGTGAAAGCAATAACTGTCGCTAGAATTGGAACTTGACTGGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU847825 lncRNA upstream 11273 75363750 ~ 75368229 (+) False G746836
TU847826 lncRNA upstream 11273 75363750 ~ 75368229 (+) False G746836
TU847827 lncRNA upstream 11273 75363750 ~ 75368229 (+) True G746836
TU847835 lncRNA upstream 15929 75362841 ~ 75363573 (+) True G746840
TU847834 lncRNA upstream 17312 75360221 ~ 75362190 (+) True G746839
TU848014 lncRNA downstream 81262 75464390 ~ 75464612 (+) True G746993
TU848016 lncRNA downstream 86783 75469911 ~ 75470111 (+) True G746995
TU848064 lncRNA downstream 156127 75539255 ~ 75543094 (+) False G747035
TU848065 lncRNA downstream 156127 75539255 ~ 75542907 (+) True G747035
TU848068 lncRNA downstream 159839 75542967 ~ 75543486 (+) True G747038
XM_036986260.1 mRNA upstream 21548 75151419 ~ 75357954 (+) False LOC110530987
XM_021613832.2 mRNA upstream 282844 75088776 ~ 75096658 (+) True psmb5
XM_021614269.2 mRNA upstream 293866 75084467 ~ 75085636 (+) True LOC110530986
NM_001160615.2 mRNA upstream 345683 75031926 ~ 75033819 (+) False nedd8
XM_021613820.2 mRNA upstream 415053 74959896 ~ 74964449 (+) False homeza
XM_036986261.1 mRNA downstream 5499 75388627 ~ 75444838 (+) False LOC110530620
XM_036986262.1 mRNA downstream 5499 75388627 ~ 75444838 (+) True LOC110530620
XM_021613835.2 mRNA downstream 107707 75490835 ~ 75522652 (+) True LOC110530623
XM_021613837.2 mRNA downstream 161796 75544924 ~ 75566032 (+) False tgm1l1
XM_021613836.2 mRNA downstream 161798 75544926 ~ 75566032 (+) True tgm1l1
TU847837 other upstream 22345 75350208 ~ 75357157 (+) False LOC110530987
TU847942 other upstream 51307 75327772 ~ 75328195 (+) True G746936
TU846909 other upstream 345606 75014644 ~ 75033896 (+) False nedd8
TU846908 other upstream 345606 75023164 ~ 75033896 (+) False nedd8
TU846907 other upstream 345606 75031930 ~ 75033896 (+) True nedd8
TU848805 other downstream 732565 76115693 ~ 76115986 (+) True G747680
TU849158 other downstream 856822 76239950 ~ 76394329 (+) True G747987
TU849434 other downstream 1068442 76451570 ~ 76452437 (+) True LOC110530655
TU849632 other downstream 1323602 76706730 ~ 76707644 (+) False G748432
TU850161 other downstream 1767535 77150663 ~ 77177349 (+) True G748905

Expression Profile