RNA id: TU848065


Basic Information

Item Value
RNA id TU848065
length 207
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G747035
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 75539255 ~ 75543094 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tcgtacatcagctgatatctcaaagtgctgtacagaaacccagcctaaaaccccaaacagcaagcaatgcaggtgtagaagcacgatggctaggaaaaactccctagaaaggccaaaacctaggaagaaacctagagaggaaccaggctatgtggggtggccagtcctcttctggctgtgccgggtggagattataacagaacatgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU848016 lncRNA upstream 69144 75469911 ~ 75470111 (+) True G746995
TU848014 lncRNA upstream 74643 75464390 ~ 75464612 (+) True G746993
TU847965 lncRNA upstream 156012 75381368 ~ 75383243 (+) False G746951
TU847968 lncRNA upstream 156127 75379502 ~ 75383128 (+) False G746951
TU848068 lncRNA downstream 60 75542967 ~ 75543486 (+) True G747038
TU848101 lncRNA downstream 62468 75605375 ~ 75607233 (+) True G747065
TU848146 lncRNA downstream 127885 75670792 ~ 75671187 (+) True G747098
TU848166 lncRNA downstream 145458 75688365 ~ 75691854 (+) False G747118
TU848167 lncRNA downstream 145458 75688365 ~ 75697197 (+) True G747118
XM_021613835.2 mRNA upstream 16603 75490835 ~ 75522652 (+) True LOC110530623
XM_036986261.1 mRNA upstream 94417 75388627 ~ 75444838 (+) False LOC110530620
XM_036986262.1 mRNA upstream 94417 75388627 ~ 75444838 (+) True LOC110530620
XM_036986260.1 mRNA upstream 181301 75151419 ~ 75357954 (+) False LOC110530987
XM_021613832.2 mRNA upstream 442597 75088776 ~ 75096658 (+) True psmb5
XM_021613837.2 mRNA downstream 2017 75544924 ~ 75566032 (+) False tgm1l1
XM_021613836.2 mRNA downstream 2019 75544926 ~ 75566032 (+) True tgm1l1
XM_036986266.1 mRNA downstream 52783 75595690 ~ 75609631 (+) True LOC110530628
XM_021613842.2 mRNA downstream 71033 75613940 ~ 75618260 (+) True LOC110530629
XM_021613844.2 mRNA downstream 98347 75641254 ~ 75645294 (+) False LOC110530631
TU847964 other upstream 156127 75379502 ~ 75383128 (+) False G746951
TU847837 other upstream 182098 75350208 ~ 75357157 (+) False LOC110530987
TU847942 other upstream 211060 75327772 ~ 75328195 (+) True G746936
TU846908 other upstream 505359 75023164 ~ 75033896 (+) False nedd8
TU848805 other downstream 572786 76115693 ~ 76115986 (+) True G747680
TU849158 other downstream 697043 76239950 ~ 76394329 (+) True G747987
TU849434 other downstream 908663 76451570 ~ 76452437 (+) True LOC110530655
TU849632 other downstream 1163823 76706730 ~ 76707644 (+) False G748432
TU850161 other downstream 1607756 77150663 ~ 77177349 (+) True G748905

Expression Profile