RNA id: TU848167



Basic Information


Item Value
RNA id TU848167
length 473
lncRNA type antisense_over
GC content 0.38
exon number 2
gene id G747118
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 75688365 ~ 75697197 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATGCCTTTAATACCAAAACAAATAAACATTGAAATTGTTTAatgtttgtatttgtttaacatttatttaactaggcaagtcaataaaGACATTATCTCCCAAAAAATCATGTCTATGTTTGCATTTAAGCCTCTGTTTTGGATTTGTCCACTTTTTTAACAGTGTTCCCtaagtcaatgaagagcacattcttatttgcaatggCAGCCTTTTCACTAATAAAATCTTCATCAGTAACATATCCGTGTAACGTGAGTCATATAATGTAcattatacacagagagaaagaccatTGCAGATGGCAGTTTTAATGTCCTTGTGTGCACTTATGGCAGAACTGGTCCACATGTATGCATATAAACATgcaaactcacacacacgcacacacgcacgcacgcacgcacacacacacgcacacacacacacacacacacacacacacacacacacacacacacacacacacacacaca

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU848146 lncRNA upstream 17178 75670792 ~ 75671187 (+) True G747098
TU848101 lncRNA upstream 81132 75605375 ~ 75607233 (+) True G747065
TU848068 lncRNA upstream 144879 75542967 ~ 75543486 (+) True G747038
TU848064 lncRNA upstream 145271 75539255 ~ 75543094 (+) False G747035
TU848615 lncRNA downstream 72443 75769640 ~ 75770618 (+) True G747508
TU848623 lncRNA downstream 85080 75782277 ~ 75782622 (+) True G747516
TU848624 lncRNA downstream 85861 75783058 ~ 75783283 (+) True G747517
TU848632 lncRNA downstream 104776 75801973 ~ 75802216 (+) True G747525
TU848635 lncRNA downstream 110628 75807825 ~ 75808298 (+) True G747528
XM_021613846.2 mRNA upstream 15544 75666314 ~ 75672821 (+) True LOC110530632
trnae-cuc-7 mRNA upstream 26845 75661449 ~ 75661520 (+) True trnae-cuc-7
XM_021613844.2 mRNA upstream 43071 75641254 ~ 75645294 (+) False LOC110530631
XM_021613845.2 mRNA upstream 43071 75641254 ~ 75645294 (+) True LOC110530631
XM_021613842.2 mRNA upstream 70105 75613940 ~ 75618260 (+) True LOC110530629
XM_021613848.2 mRNA downstream 98060 75795257 ~ 75799474 (+) True LOC110530636
LOC110530988 mRNA downstream 104076 75801273 ~ 75826734 (+) True LOC110530988
XM_036986274.1 mRNA downstream 261811 75959008 ~ 75997054 (+) False LOC110530640
XM_036986272.1 mRNA downstream 284451 75981648 ~ 75997054 (+) False LOC110530640
XM_036986271.1 mRNA downstream 284452 75981649 ~ 75997054 (+) False LOC110530640
TU847964 other upstream 305237 75379502 ~ 75383128 (+) False G746951
TU847837 other upstream 331208 75350208 ~ 75357157 (+) False LOC110530987
TU847942 other upstream 360170 75327772 ~ 75328195 (+) True G746936
TU846908 other upstream 654469 75023164 ~ 75033896 (+) False nedd8
TU848805 other downstream 418496 76115693 ~ 76115986 (+) True G747680
TU849158 other downstream 542753 76239950 ~ 76394329 (+) True G747987
TU849434 other downstream 754373 76451570 ~ 76452437 (+) True LOC110530655
TU849632 other downstream 1009533 76706730 ~ 76707644 (+) False G748432
TU850161 other downstream 1453466 77150663 ~ 77177349 (+) True G748905

Expression Profile