RNA id: TU848643



Basic Information


Item Value
RNA id TU848643
length 670
lncRNA type antisense_over
GC content 0.41
exon number 1
gene id G747536
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 75829121 ~ 75829790 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CCAGtttttatattatatataggaTAGACAGATGTATCGATTAACCTCTTTATAGTATTTGTGAGAATGGTTAAACGCTAGGGTTACTAGTGGTTCCTGGACTGCGGCGAAAAGCACCAAAGCTCTAAAACCAATATTGACATATTGGGTTTGGGGGAATAAAGTGGACATGTCCAGTGGGGACAAAATCTCTGacactggaaacacttatctccctcactaactttaagcaccagctgtcagagcagctcacagatcactgcacatagcccatccaactacctcatcccccatactgtttttatttgtattattttgcgcctttgcaccccagtatctctacttgcacacctatcattccagtgttcaaTTGCTATATTGtcattatttcaccactatgacctatttattgccttacctcatttgcacacactgtatatagaccgtttctctattgtgttattgactgtatgtttgtttattccatgtgtaactgtgttatttgtgtcgcactgctttgctttatcttggccaggtcgcagttgtaaatgagaacttgttctcaactagcctacctggttaaataaaggtgaaattaaaaaaattatatattaaCAGACATGGcctgggaggaggaaggggaggtggggagaggagatatGGGCGGAGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU848641 lncRNA upstream 5607 75823222 ~ 75823514 (+) True G747534
TU848642 lncRNA upstream 6551 75821645 ~ 75822570 (+) True G747535
TU848636 lncRNA upstream 18801 75810064 ~ 75810320 (+) True G747529
TU848635 lncRNA upstream 20823 75807825 ~ 75808298 (+) True G747528
TU848632 lncRNA upstream 26905 75801973 ~ 75802216 (+) True G747525
TU848652 lncRNA downstream 15765 75845555 ~ 75845756 (+) True G747545
TU848653 lncRNA downstream 15999 75845789 ~ 75846068 (+) True G747546
TU848672 lncRNA downstream 51687 75881477 ~ 75881817 (+) True G747565
TU848673 lncRNA downstream 79743 75909533 ~ 75909786 (+) True G747566
TU848684 lncRNA downstream 100307 75930097 ~ 75931667 (+) True G747573
LOC110530988 mRNA upstream 2387 75801273 ~ 75826734 (+) True LOC110530988
XM_021613848.2 mRNA upstream 29647 75795257 ~ 75799474 (+) True LOC110530636
XM_021613846.2 mRNA upstream 156300 75666314 ~ 75672821 (+) True LOC110530632
trnae-cuc-7 mRNA upstream 167601 75661449 ~ 75661520 (+) True trnae-cuc-7
XM_021613844.2 mRNA upstream 183827 75641254 ~ 75645294 (+) False LOC110530631
XM_036986274.1 mRNA downstream 129218 75959008 ~ 75997054 (+) False LOC110530640
XM_036986272.1 mRNA downstream 151858 75981648 ~ 75997054 (+) False LOC110530640
XM_036986271.1 mRNA downstream 151859 75981649 ~ 75997054 (+) False LOC110530640
XM_036986273.1 mRNA downstream 151860 75981650 ~ 75997054 (+) True LOC110530640
XM_021613860.2 mRNA downstream 177481 76007271 ~ 76044709 (+) True LOC110530643
TU847964 other upstream 445993 75379502 ~ 75383128 (+) False G746951
TU847837 other upstream 471964 75350208 ~ 75357157 (+) False LOC110530987
TU847942 other upstream 500926 75327772 ~ 75328195 (+) True G746936
TU846908 other upstream 795225 75023164 ~ 75033896 (+) False nedd8
TU848805 other downstream 285903 76115693 ~ 76115986 (+) True G747680
TU849158 other downstream 410160 76239950 ~ 76394329 (+) True G747987
TU849434 other downstream 621780 76451570 ~ 76452437 (+) True LOC110530655
TU849632 other downstream 876940 76706730 ~ 76707644 (+) False G748432
TU850161 other downstream 1320873 77150663 ~ 77177349 (+) True G748905

Expression Profile