RNA id: TU848672



Basic Information


Item Value
RNA id TU848672
length 341
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G747565
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 75881477 ~ 75881817 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GTATTATTTTTgcactagttggctgtacctgcaacAAAACGCCACTATTTTCCCTTCATAGCtggttctccatcttctttttaaatagggagcccatttgttttcagcacttttatatcccatgttttcaccatgtcttgtccatctgcagcagacatactgtatggtgagcagtgttttcaccatgtctccctcttgtccctctgcagcagacatactgtatggtgagcagtgttttcaccatgtctccctcttgtccatctgcagcagacatactgtatggtgagcagtgttttcaccatgtctccctcttgtccctctgcagcagacatactgtatgg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU848653 lncRNA upstream 35409 75845789 ~ 75846068 (+) True G747546
TU848652 lncRNA upstream 35721 75845555 ~ 75845756 (+) True G747545
TU848643 lncRNA upstream 51687 75829121 ~ 75829790 (+) True G747536
TU848641 lncRNA upstream 57963 75823222 ~ 75823514 (+) True G747534
TU848642 lncRNA upstream 58907 75821645 ~ 75822570 (+) True G747535
TU848673 lncRNA downstream 27716 75909533 ~ 75909786 (+) True G747566
TU848684 lncRNA downstream 48280 75930097 ~ 75931667 (+) True G747573
TU848696 lncRNA downstream 56033 75937850 ~ 75938147 (+) True G747580
TU848714 lncRNA downstream 73376 75955193 ~ 75955477 (+) True G747597
TU848715 lncRNA downstream 74024 75955841 ~ 75956125 (+) True G747598
LOC110530988 mRNA upstream 54743 75801273 ~ 75826734 (+) True LOC110530988
XM_021613848.2 mRNA upstream 82003 75795257 ~ 75799474 (+) True LOC110530636
XM_021613846.2 mRNA upstream 208656 75666314 ~ 75672821 (+) True LOC110530632
trnae-cuc-7 mRNA upstream 219957 75661449 ~ 75661520 (+) True trnae-cuc-7
XM_021613845.2 mRNA upstream 236183 75641254 ~ 75645294 (+) True LOC110530631
XM_036986274.1 mRNA downstream 77191 75959008 ~ 75997054 (+) False LOC110530640
XM_036986272.1 mRNA downstream 99831 75981648 ~ 75997054 (+) False LOC110530640
XM_036986271.1 mRNA downstream 99832 75981649 ~ 75997054 (+) False LOC110530640
XM_036986273.1 mRNA downstream 99833 75981650 ~ 75997054 (+) True LOC110530640
XM_021613860.2 mRNA downstream 125454 76007271 ~ 76044709 (+) True LOC110530643
TU847964 other upstream 498349 75379502 ~ 75383128 (+) False G746951
TU847837 other upstream 524320 75350208 ~ 75357157 (+) False LOC110530987
TU847942 other upstream 553282 75327772 ~ 75328195 (+) True G746936
TU846908 other upstream 847581 75023164 ~ 75033896 (+) False nedd8
TU848805 other downstream 233876 76115693 ~ 76115986 (+) True G747680
TU849158 other downstream 358133 76239950 ~ 76394329 (+) True G747987
TU849434 other downstream 569753 76451570 ~ 76452437 (+) True LOC110530655
TU849632 other downstream 824913 76706730 ~ 76707644 (+) False G748432
TU850161 other downstream 1268846 77150663 ~ 77177349 (+) True G748905

Expression Profile