RNA id: TU848684


Basic Information

Item Value
RNA id TU848684
length 1551
lncRNA type antisense_over
GC content 0.40
exon number 2
gene id G747573
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 75930097 ~ 75931667 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGAAAATATAAACCACACAACCTTTGACAGGCGCATCATCACAACCATACACTCACAGGAcagctactgtatgtacaggatatacaacaacatcaatatagcGCTCCGTATTCAATAACACACCATCACAATCCCTTGGCAAAAAACCACAAGGCATATGGAGAGAAAAACTTCAAATAtatcctttcccctccctctcatccgACTCCCCAATAAGCGGCGAAAGTCCTTTTGGCTTGTCATGATCGCTATTAAAGCATAATAAAATCAATCGTTTTTTACAATTGGGTGGCAGTCCACAAAGCTATAGAATACTAAAATGATCATATTTGAGACAAACACTGAACTGTTTTTGAAACACATTTTGAAAGTAAAGCCAGAAAGTTATTGCGAGAACTTTAGGAATGTGCTGCCATTTATGATTTATTCACATATTGTCCAACCCAATTAGATCAGTAGTTTAATGAGAAACAGCTGAACGCCTAccaaacacagaacacacaaTCAAACATTCAAAGATGCTATAGCTAACTATCCAGCTAAAATCACATAAATGCTAATGGTAacaatcacaggaggttggtggcaccttaattggagaggacgggctcgtggtaaggGCTGGAGAAGATTTTGATACCATtccaacaatacatcagacacaaggtttccaggtgtttgatatcattccattcactccgttccagacattattatgagccgtcctcccctcagcagcctccactggtaacAATATCAAACAGTGTAAAAGCAATTTAACAAAGGTATAAAAATGAATTAAGTCTAAAGTCTGAGTAGTATATGGGATATGTtcagatattatactgtataatTAACGTTTTTACAACCTACTTGCAATGTTCATATAATGTTCCGTATGTCTCAAGTCAGGCATTTGCACTATGATGCCTCTTTGGGTTTGGCTTATGTCATGTATCTTATGAACATTCATATAGAGGTTCTAATCAGGAACAGCCACACCCGGCAATGTCATTTCTCTACAATATGACCACCCGATGTTGTGCCATTCATTATCAATAATACTGATATTTGATTGTCTGCACTAAACTTCCATCCACTCCTCCTTCCCCCAATGATCCTGCTTCCCATCAACCCTCTCCCAGCTACACATCCCAGACCATTCACTTTCATAGGCAACACTCAAAGTGCACTTGAGTACTTCACCCTCCAGTCAGAGGAGACTTTACTGGATTAGAGCACTTCTTTTCTCCAAGTGGTTTTAAACTACATCAACTATACCTGAATAAGGGCACTTCTTATGACCTTGTCATAATGGTTTAAGTCAGAATCAGGTTTATATGACTGATCTTCAATTAGTCCTTTAAGGTAGATCATAGGTTACTTCGTTGAGTACTTCTCTGCACTGCGCAGGGCCCCTCTCATGCTGAAGTGTACTTGTTAGTAGCTCGTGAGTTGCTCTGGTCGGAGGCCCGGTCTGAGACTTTGAGCTTCATACAGGACTGTTTCTCATCCATCAACATCTCAGCTGGCAGACACCAGCAACACAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU848673 lncRNA upstream 20311 75909533 ~ 75909786 (+) True G747566
TU848672 lncRNA upstream 48280 75881477 ~ 75881817 (+) True G747565
TU848653 lncRNA upstream 84029 75845789 ~ 75846068 (+) True G747546
TU848652 lncRNA upstream 84341 75845555 ~ 75845756 (+) True G747545
TU848643 lncRNA upstream 100307 75829121 ~ 75829790 (+) True G747536
TU848696 lncRNA downstream 6183 75937850 ~ 75938147 (+) True G747580
TU848714 lncRNA downstream 23526 75955193 ~ 75955477 (+) True G747597
TU848715 lncRNA downstream 24174 75955841 ~ 75956125 (+) True G747598
TU848736 lncRNA downstream 43576 75975243 ~ 75975468 (+) True G747618
TU848743 lncRNA downstream 52714 75984381 ~ 75985548 (+) True G747625
LOC110530988 mRNA upstream 103363 75801273 ~ 75826734 (+) True LOC110530988
XM_021613848.2 mRNA upstream 130623 75795257 ~ 75799474 (+) True LOC110530636
XM_021613846.2 mRNA upstream 257276 75666314 ~ 75672821 (+) True LOC110530632
trnae-cuc-7 mRNA upstream 268577 75661449 ~ 75661520 (+) True trnae-cuc-7
XM_021613845.2 mRNA upstream 284803 75641254 ~ 75645294 (+) True LOC110530631
XM_036986274.1 mRNA downstream 27341 75959008 ~ 75997054 (+) False LOC110530640
XM_036986272.1 mRNA downstream 49981 75981648 ~ 75997054 (+) False LOC110530640
XM_036986271.1 mRNA downstream 49982 75981649 ~ 75997054 (+) False LOC110530640
XM_036986273.1 mRNA downstream 49983 75981650 ~ 75997054 (+) True LOC110530640
XM_021613860.2 mRNA downstream 75604 76007271 ~ 76044709 (+) True LOC110530643
TU847964 other upstream 546969 75379502 ~ 75383128 (+) False G746951
TU847837 other upstream 572940 75350208 ~ 75357157 (+) False LOC110530987
TU847942 other upstream 601902 75327772 ~ 75328195 (+) True G746936
TU846908 other upstream 896201 75023164 ~ 75033896 (+) False nedd8
TU848805 other downstream 184026 76115693 ~ 76115986 (+) True G747680
TU849158 other downstream 308283 76239950 ~ 76394329 (+) True G747987
TU849434 other downstream 519903 76451570 ~ 76452437 (+) True LOC110530655
TU849632 other downstream 775063 76706730 ~ 76707644 (+) False G748432
TU850161 other downstream 1218996 77150663 ~ 77177349 (+) True G748905

Expression Profile