RNA id: TU849633


Basic Information

Item Value
RNA id TU849633
length 340
lncRNA type intronic
GC content 0.49
exon number 3
gene id G748432
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 76706730 ~ 76708278 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggtacagagtcaatgtggaggctatatacagggggtaccggtacagagtcaatgtggaggctatatacaggtggtaccggtacagagtcaatgtggaggctatatacagagggtaccggtacagagtcaatgtggaggctatatacagggggtaccggtacagagtcaatgtggaggctatatacaggtggtaccggtacagagtcaatgtggaggctatatacaggtggtaccggtacagagtcaatgtggaggctatatacaggtggtaccggtacagagtcaatgtggaggctatatacaggtggtaccggtacagagtcaatgtggaggctatata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU849580 lncRNA upstream 98917 76606811 ~ 76607813 (+) True G748384
TU849519 lncRNA upstream 162204 76527020 ~ 76544526 (+) True LOC110530656
TU849499 lncRNA upstream 202924 76503349 ~ 76503806 (+) True G748318
TU849497 lncRNA upstream 203966 76502310 ~ 76502764 (+) True G748316
TU849493 lncRNA upstream 207842 76498675 ~ 76498888 (+) True G748312
TU849805 lncRNA downstream 49628 76757516 ~ 76757737 (+) True G748577
TU849815 lncRNA downstream 57085 76764973 ~ 76765288 (+) True G748587
TU849818 lncRNA downstream 57931 76765819 ~ 76766048 (+) True G748590
TU849956 lncRNA downstream 160830 76868718 ~ 76868973 (+) True G748724
TU849959 lncRNA downstream 162663 76870551 ~ 76870773 (+) True G748727
XM_036986291.1 mRNA upstream 31718 76526816 ~ 76675012 (+) False LOC110530656
XM_036986286.1 mRNA upstream 31814 76526812 ~ 76674916 (+) False LOC110530656
XM_036986290.1 mRNA upstream 36278 76526812 ~ 76670452 (+) False LOC110530656
XM_036986292.1 mRNA upstream 36283 76526816 ~ 76670447 (+) False LOC110530656
XM_036986293.1 mRNA upstream 52068 76526816 ~ 76654662 (+) False LOC110530656
XM_036986298.1 mRNA downstream 311573 77019461 ~ 77046440 (+) False LOC110530659
XM_036986294.1 mRNA downstream 311573 77019461 ~ 77046447 (+) False LOC110530659
XM_036986297.1 mRNA downstream 321504 77029392 ~ 77046442 (+) False LOC110530659
XM_036986295.1 mRNA downstream 322286 77030174 ~ 77046442 (+) False LOC110530659
XM_036986296.1 mRNA downstream 322332 77030220 ~ 77046442 (+) True LOC110530659
TU849434 other upstream 254293 76451570 ~ 76452437 (+) True LOC110530655
TU849158 other upstream 312401 76239950 ~ 76394329 (+) True G747987
TU848805 other upstream 590744 76115693 ~ 76115986 (+) True G747680
TU847964 other upstream 1323602 75379502 ~ 75383128 (+) False G746951
TU847837 other upstream 1349573 75350208 ~ 75357157 (+) False LOC110530987
TU850161 other downstream 442775 77150663 ~ 77177349 (+) True G748905
TU850174 other downstream 471456 77179344 ~ 77180128 (+) True G748917
TU850224 other downstream 558764 77266652 ~ 77272660 (+) True G748959
TU850462 other downstream 594849 77302737 ~ 77356024 (+) False G749137
TU850453 other downstream 645749 77353637 ~ 77356024 (+) False G749137

Expression Profile