RNA id: TU849959


Basic Information

Item Value
RNA id TU849959
length 223
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G748727
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 76870551 ~ 76870773 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATAGTAAAGAGTCTGTTATCCccccacctttgaccctgttcctccttgttagccaaatagctAACTTTGCCTGAGaaaacagaaaattcaacaaaacacatttggcTTTCTCCTTACTCGAATACCTGAATCCCATTATGAACATCCCAACAGTAAAAACCACGcccaacctctcacacagacattccaacagagacattaaaGGCATTAACATggtgcacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU849956 lncRNA upstream 1578 76868718 ~ 76868973 (+) True G748724
TU849818 lncRNA upstream 104503 76765819 ~ 76766048 (+) True G748590
TU849815 lncRNA upstream 105263 76764973 ~ 76765288 (+) True G748587
TU849805 lncRNA upstream 112814 76757516 ~ 76757737 (+) True G748577
TU849631 lncRNA upstream 162273 76706730 ~ 76708278 (+) False G748432
TU849972 lncRNA downstream 11329 76882102 ~ 76882338 (+) True G748740
TU849975 lncRNA downstream 13412 76884185 ~ 76907217 (+) True G748743
TU850009 lncRNA downstream 40587 76911360 ~ 76911586 (+) True G748776
TU850012 lncRNA downstream 43903 76914676 ~ 76914875 (+) True G748779
TU850026 lncRNA downstream 61951 76932724 ~ 76933130 (+) False G748793
XM_036986283.1 mRNA upstream 150023 76526810 ~ 76720528 (+) False LOC110530656
XM_036986284.1 mRNA upstream 150023 76526810 ~ 76720528 (+) False LOC110530656
XM_036986291.1 mRNA upstream 195539 76526816 ~ 76675012 (+) False LOC110530656
XM_036986286.1 mRNA upstream 195635 76526812 ~ 76674916 (+) False LOC110530656
XM_036986290.1 mRNA upstream 200099 76526812 ~ 76670452 (+) False LOC110530656
XM_036986298.1 mRNA downstream 148688 77019461 ~ 77046440 (+) False LOC110530659
XM_036986294.1 mRNA downstream 148688 77019461 ~ 77046447 (+) False LOC110530659
XM_036986297.1 mRNA downstream 158619 77029392 ~ 77046442 (+) False LOC110530659
XM_036986295.1 mRNA downstream 159401 77030174 ~ 77046442 (+) False LOC110530659
XM_036986296.1 mRNA downstream 159447 77030220 ~ 77046442 (+) True LOC110530659
TU849632 other upstream 162907 76706730 ~ 76707644 (+) False G748432
TU849434 other upstream 418114 76451570 ~ 76452437 (+) True LOC110530655
TU849158 other upstream 476222 76239950 ~ 76394329 (+) True G747987
TU848805 other upstream 754565 76115693 ~ 76115986 (+) True G747680
TU847964 other upstream 1487423 75379502 ~ 75383128 (+) False G746951
TU850161 other downstream 279890 77150663 ~ 77177349 (+) True G748905
TU850174 other downstream 308571 77179344 ~ 77180128 (+) True G748917
TU850224 other downstream 395879 77266652 ~ 77272660 (+) True G748959
TU850462 other downstream 431964 77302737 ~ 77356024 (+) False G749137
TU850453 other downstream 482864 77353637 ~ 77356024 (+) False G749137

Expression Profile