RNA id: TU850455


Basic Information

Item Value
RNA id TU850455
length 2367
lncRNA type read_through
GC content 0.44
exon number 4
gene id G749137
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 77302737 ~ 77382611 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tttcttaggtttttattGTACATTTTTGCCTGAATTTATCATATAGCTTTTTTTGTGAATTTTCACAAAACACAAAAATTAACACCAATAAACAGAACCAatcaacacagtcaacaccataCAAATGCAGCAGGCAGCCTGGTGGAGCATTGGGCCATCAACCCAGTAAGGTTACTTGTTCGAATCCCCAGGCCGTaaaggtggaaaaatattttgttctgcatatgagcaaggcaattaacccccaacaactgctccctgAGCACCGATGGCGTGGATTCAGAGGGTTTGGATTAAATGTGGAATATACATTGAGTTGAATTCATTAAGTTGTGCAACtggctaggtatcccccctttctttACAAAGATCTCCAGCCCATGATACATCataaagagaaaaataaaatgtaatttactgAAAGATTTGTCATGAGGACAGATCAAGTCATCCACCCACACCAACAGCATGTTTGTCATGAGGACAGGTCGAGCCATCCACCCACACCAACAGCATGTTTGTCATGAGGACAGGTCGAGCCATCCACCCACACCAACAGCATGTTTGTCATGAGGACAGGTCAAGCCCTCCACCCACACCAACAGCATGTTTGTCATGAGGACAGGTCAAGCCACCCACCCACACCAACAGCATGTTTGTCATCCCCTCAAAATAGCAAAGAAAGATGAACAGAAGGGATTTTTGGGAACAGATTCTCTTTTACATTTGACACAGATTAGCAATTAAACCAAATTAAAAGCAGGGTACATACATGTTAAACATTAACAAAAGCAGTTACACAAGCAGTTAAAAATGAGAATATCAACGTCATATATCATGTTCAGGTGAGCTCACCACTGGACAAGTCTCTCCCAGGGTGGAGTGCGTGCCTTTTCACCCCCAGATTTCTCCATCATGAATCTGACCTGGACCCCAGGAGACATGGTCATACTAGACTTGTACACATAGACATCATACCCAGGTATATCTGCCCAATCAGAGTGGCTTTCCTCAGAGAACTTTACAGCCCATTGCCAGGTGTTATAATCCAGGGTGCCTTCAGAAGAGTAGAACCCAACCCAGGAGTTATTAAAAGTTTTCTTCCAGGCAGTGAAGGATTTCTTTACATACAGACGAGCGCAGGCCTTTCCATCCTTTACAAATAGCTGCAGACTGGCGTCATGTCCGTTAATATCAACAGGAATCTCTCTGTTGGCATCGTGAAACTCAGAACCTCTCCAGATCTCCTCTCCGATAGTGGACCCACACCCCAAGTAATTCCACCATGATTTTACCTCCTTATGGAGCCGGACCTGGAGACCAGGGTTAAGGGGTACTGAGGTGTTATAGCTCCCAGAGGCTTTGCCCCCGACTGACGATCTGTCCAGCACGCTCTTACTGTCACTGTTATTGCTCTTATAAAGCATCACCATTACACCCTGGTCTAATAGCCTCTTGGGGATCCCACTCCAGATGATCCTGGCTTTTCCTCTATCTGTGGTTTTCACACCAAGCTTAATCAATGCATTATCCTTATCCTCCATGCCACTCTGGGGAAGAGATGTTAAACGAAGAGCTTGCTCCTTAATAAATAAGGTTTTGGGACGTGTAAAGTACAATACAATTGCCAGAAGAAGTGCCAGACCAGGTGTGTGTCTCCAGATCTTTTCCAGTTCTTGCAGACTGTTGTGGTTGATCTCTACATTATATATACGTGGAATGTCATTTTGGTCAATGGTTGGTAGACTTTGGATTTGTCTAAGGAGGCTGACATTGACACGGTTTGTATTGGCTGGATCATAGCCACTTCCTCTGTTTTCATTTTGTTGATAGTGCTGTGTGACATAGACCTCGTCTGCAATGAACTGATTGGACCCATCCTCCCTAACTCTGAGTATGACCCTGTCCCTGTTGTTCTCAGGTCCCCATGAGTTGTAGAATCTTCGAGTTACATAATAAGGAAGTGCCCTTGAGCCATTTCTCTTCATATTCCCTAGTGAGTAGTAACTTCCGCTTTCAGGATGCAGAATAGGTAATGAAGGTGGTCTGTTTCCATAGAAATGAAAGCCATTGTCTCCACTGGTTGGGTTGAAATTGAGTCTCATGTTGCCGTTGTTGTCAATGTAAATGTTGTTGGCTAGCCAGTGGAGCAGCATGAGGCCGTGTCGAGGAAAGGTGTGACCAAACTGTATGTCCTTGAGATCATCTATTGATTTAAGGGTTCCTCTGACAGCGCATACTGaggtcagagacagacacaagATGAAACAACCCAGGATGCCCCTTTCAACCATGGTCGACCTAAGACAAAACAACGGTTGTGTTAACGTTTGGAATGATACCTGTAACTTATTTCTAGTGGTTGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU850230 lncRNA upstream 79709 77272994 ~ 77273928 (+) True G748964
TU850210 lncRNA upstream 89630 77246201 ~ 77264007 (+) False G748951
TU850220 lncRNA upstream 91837 77261180 ~ 77261800 (+) True G748957
TU850212 lncRNA upstream 97916 77246201 ~ 77255721 (+) True G748951
TU850205 lncRNA upstream 117051 77236309 ~ 77236586 (+) True G748946
TU850464 lncRNA downstream 3062 77385673 ~ 77386822 (+) False LOC110530676
TU850465 lncRNA downstream 3062 77385673 ~ 77386822 (+) True LOC110530676
TU850592 lncRNA downstream 50168 77432779 ~ 77433139 (+) True G749252
TU850617 lncRNA downstream 67384 77449995 ~ 77450329 (+) True G749277
TU850645 lncRNA downstream 153945 77536556 ~ 77541481 (+) True LOC110530678
XR_002474569.2 mRNA upstream 9550 77312401 ~ 77344087 (+) True LOC110530673
XM_021613911.2 mRNA upstream 25048 77312401 ~ 77328589 (+) False LOC110530673
XM_021613912.2 mRNA upstream 25048 77312401 ~ 77328589 (+) False LOC110530673
XM_021613888.2 mRNA upstream 142823 77181864 ~ 77210814 (+) False LOC110530663
XR_002474571.2 mRNA downstream 2970 77385581 ~ 77386837 (+) False LOC110530676
XM_021613915.2 mRNA downstream 80192 77462803 ~ 77467237 (+) True LOC110530677
XM_036986328.1 mRNA downstream 95736 77478347 ~ 77541551 (+) False LOC110530678
XM_036986329.1 mRNA downstream 95736 77478347 ~ 77541551 (+) False LOC110530678
XM_021613917.2 mRNA downstream 160909 77543520 ~ 77547016 (+) True LOC110530679
TU850224 other upstream 80977 77266652 ~ 77272660 (+) True G748959
TU850174 other upstream 173509 77179344 ~ 77180128 (+) True G748917
TU850161 other upstream 176288 77150663 ~ 77177349 (+) True G748905
TU849632 other upstream 645993 76706730 ~ 76707644 (+) False G748432
TU849434 other upstream 901200 76451570 ~ 76452437 (+) True LOC110530655
TU850834 other downstream 501626 77884237 ~ 77887356 (+) False LOC110530993
TU851066 other downstream 861599 78244210 ~ 78245615 (+) True G749663
TU852066 other downstream 1414531 78797142 ~ 78797548 (+) True G750533
TU852454 other downstream 1596619 78979230 ~ 78979981 (+) True G750854
TU852557 other downstream 1812659 79195270 ~ 79197378 (+) True G750935

Expression Profile