RNA id: TU850916


Basic Information

Item Value
RNA id TU850916
length 427
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G749529
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 77945063 ~ 77945489 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

accacaacactacatacagagagacaccacaacactacatacagagagacaccacaacactacatacagagacaccacaacactacatacagagacaccacaacactacatacagagagacaacactacatacagagagacaccacaacactacatacagagagacaccacaacactacatacagagagacaccacaacactacatacagagagacaccacaacactacatacagagagaccacaacactacatacagagagacaccacaacactacatacagagagacaccacaacactacatacagagacaccacaacactacatacagagacaccacaacactacatacagagagacaacactacatacagagagacaccacaacactacatacagagagacaccacaacactacatacagaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU850915 lncRNA upstream 309 77944504 ~ 77944754 (+) True G749528
TU850914 lncRNA upstream 1666 77940803 ~ 77943397 (+) True G749527
TU850908 lncRNA upstream 12767 77932071 ~ 77932296 (+) True G749521
TU850842 lncRNA upstream 22435 77919570 ~ 77922628 (+) False G749465
TU850918 lncRNA downstream 2833 77948322 ~ 77948620 (+) True G749531
TU850922 lncRNA downstream 6906 77952395 ~ 77952608 (+) True G749535
TU850923 lncRNA downstream 8279 77953768 ~ 77953981 (+) True G749536
TU850935 lncRNA downstream 53244 77998733 ~ 77998953 (+) True G749547
TU850945 lncRNA downstream 75854 78021343 ~ 78021813 (+) True G749557
XM_036986340.1 mRNA upstream 25576 77894988 ~ 77919487 (+) False LOC110530683
XM_036986341.1 mRNA upstream 25576 77894988 ~ 77919487 (+) True LOC110530683
XM_036986339.1 mRNA upstream 60672 77863590 ~ 77884391 (+) False LOC110530993
XR_005052959.1 mRNA upstream 129143 77811910 ~ 77815920 (+) False LOC118965560
XM_036986337.1 mRNA upstream 133687 77742349 ~ 77811376 (+) True LOC110530992
XM_036986342.1 mRNA downstream 9228 77954717 ~ 77963861 (+) False LOC110530684
XM_036986343.1 mRNA downstream 10369 77955858 ~ 77963861 (+) True LOC110530684
XM_021613927.2 mRNA downstream 28185 77973674 ~ 77977792 (+) False LOC110530687
XM_021613928.2 mRNA downstream 28185 77973674 ~ 77977792 (+) True LOC110530687
XM_021613929.2 mRNA downstream 92605 78038094 ~ 78046774 (+) True LOC110530688
TU850834 other upstream 57707 77884237 ~ 77887356 (+) False LOC110530993
TU850461 other upstream 562452 77353637 ~ 77382611 (+) False G749137
TU850462 other upstream 589039 77302737 ~ 77356024 (+) False G749137
TU850453 other upstream 589039 77353637 ~ 77356024 (+) False G749137
TU850224 other upstream 672403 77266652 ~ 77272660 (+) True G748959
TU851066 other downstream 298721 78244210 ~ 78245615 (+) True G749663
TU852066 other downstream 851653 78797142 ~ 78797548 (+) True G750533
TU852454 other downstream 1033741 78979230 ~ 78979981 (+) True G750854
TU852557 other downstream 1249781 79195270 ~ 79197378 (+) True G750935
TU852564 other downstream 1399948 79345437 ~ 79347448 (+) True ncana

Expression Profile