RNA id: TU851137



Basic Information


Item Value
RNA id TU851137
length 202
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G749731
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 78331000 ~ 78331201 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TAAATATAATGTGTGAGAGTCAATATCTCCATGTCATGTGGATGTAGGCCTATTTTAATTTATCAAAAGAAATCGAGCAACCAACAGTAACAGCTATAGacacatgtattttttttcttcttaaaaatGAACAGAAAATGTATTTCATAGATGAGGGATAATTTGCTGTTTTTAGGAAATAACCATGACGAAGATTGAGAAG

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU851065 lncRNA upstream 40989 78288574 ~ 78290011 (+) True G749662
TU851067 lncRNA upstream 90695 78240062 ~ 78240305 (+) True G749664
TU851071 lncRNA upstream 93755 78236977 ~ 78237245 (+) True G749668
TU851070 lncRNA upstream 94121 78236396 ~ 78236879 (+) True G749667
TU851059 lncRNA upstream 97737 78229435 ~ 78233263 (+) True G749657
TU851140 lncRNA downstream 4436 78335637 ~ 78335842 (+) True G749734
TU851121 lncRNA downstream 31039 78362240 ~ 78362706 (+) True G749715
TU851193 lncRNA downstream 101485 78432686 ~ 78433063 (+) True G749781
TU851224 lncRNA downstream 138591 78469792 ~ 78481035 (+) False G749807
TU851225 lncRNA downstream 141384 78472585 ~ 78473265 (+) True G749807
XM_036986344.1 mRNA upstream 142951 78072559 ~ 78188049 (+) False LOC110530995
XM_036986345.1 mRNA upstream 142951 78072559 ~ 78188049 (+) False LOC110530995
XM_036986346.1 mRNA upstream 142951 78072559 ~ 78188049 (+) True LOC110530995
XM_021613929.2 mRNA upstream 284226 78038094 ~ 78046774 (+) True LOC110530688
XM_021613928.2 mRNA upstream 353208 77973674 ~ 77977792 (+) True LOC110530687
XM_036986357.1 mRNA downstream 4700 78335901 ~ 78361471 (+) True onecut3b
XM_036986358.1 mRNA downstream 261097 78592298 ~ 78597767 (+) False LOC110530701
XM_036986359.1 mRNA downstream 261098 78592299 ~ 78597767 (+) False LOC110530701
XM_036986360.1 mRNA downstream 261098 78592299 ~ 78597767 (+) False LOC110530701
XM_036986361.1 mRNA downstream 261098 78592299 ~ 78597767 (+) True LOC110530701
TU851066 other upstream 85385 78244210 ~ 78245615 (+) True G749663
TU850834 other upstream 443644 77884237 ~ 77887356 (+) False LOC110530993
TU850461 other upstream 948389 77353637 ~ 77382611 (+) False G749137
TU850462 other upstream 974976 77302737 ~ 77356024 (+) False G749137
TU852066 other downstream 465941 78797142 ~ 78797548 (+) True G750533
TU852454 other downstream 648029 78979230 ~ 78979981 (+) True G750854
TU852557 other downstream 864069 79195270 ~ 79197378 (+) True G750935
TU852564 other downstream 1014236 79345437 ~ 79347448 (+) True ncana
TU852726 other downstream 1217296 79548497 ~ 79569877 (+) True LOC110530726

Expression Profile


TU851137 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 2.
End of interactive chart.

TU851137 Expression in each Bioproject

Bar chart with 2 bars.
TU851137 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 10.
End of interactive chart.