RNA id: TU852066



Basic Information


Item Value
RNA id TU852066
length 407
RNA type TUCP
GC content 0.53
exon number 1
gene id G750533
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 78797142 ~ 78797548 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATGTAGCGGATGAGCCGGGACAGCCTCAGCAGCCTCAGCAGGCTCAGGATCTTAGTGAAGCGTACGATCCTCAGGGCCCTGGCCGTCTTATACATCTCAGAGTCGATCCCCTTCTCCACGATCAGGAAGATATAATCCACGGGGATGGAGGAGACAAAGTCCACGATGAACCAGGTCTTCAGGTACGTCTTCTTGATGGTCTTGGGGTCCAGGATGATGTCAGAGTTGTCCTCGATGATGATGCCAGTGCGGAAGTTGAGGACCAGGTCCATGAGGAAGAAGGTGTCGGAGATGACGTTGAAGATGATCCAGGGGGTGGTCGTCCCATCGTTGAAGAAGGTGATGCCCACCGGGATGACAATCAGGTTACCCACCATGAAAAGAAGCATCGTGAAATCCCAGTAgaa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU852058 lncRNA upstream 11224 78785677 ~ 78785918 (+) True G750525
TU852056 lncRNA upstream 16126 78780765 ~ 78781016 (+) True G750523
TU852054 lncRNA upstream 18109 78778787 ~ 78779033 (+) True G750521
TU852049 lncRNA upstream 28197 78768644 ~ 78768945 (+) True G750516
TU852043 lncRNA upstream 48966 78747971 ~ 78748176 (+) True G750510
TU852306 lncRNA downstream 75418 78872966 ~ 78873344 (+) True G750731
TU852318 lncRNA downstream 95305 78892853 ~ 78893122 (+) True G750741
TU852339 lncRNA downstream 125746 78923294 ~ 78923524 (+) True G750759
TU852350 lncRNA downstream 134714 78932262 ~ 78932476 (+) True G750770
TU852440 lncRNA downstream 165798 78963346 ~ 78963575 (+) True G750840
XM_021613950.2 mRNA upstream 163064 78626521 ~ 78634078 (+) False LOC110530703
XM_021613948.2 mRNA upstream 186897 78607413 ~ 78610245 (+) True plekhj1
XM_036986358.1 mRNA upstream 199375 78592298 ~ 78597767 (+) False LOC110530701
XM_036986359.1 mRNA upstream 199375 78592299 ~ 78597767 (+) False LOC110530701
XM_036986360.1 mRNA upstream 199375 78592299 ~ 78597767 (+) False LOC110530701
XM_021613951.2 mRNA downstream 18572 78816120 ~ 78824322 (+) True LOC110530704
XM_036986367.1 mRNA downstream 33137 78830685 ~ 78861909 (+) True LOC110530706
XM_021613956.2 mRNA downstream 97043 78894591 ~ 78902977 (+) False LOC110530707
XM_021613959.2 mRNA downstream 97056 78894604 ~ 78902977 (+) False LOC110530707
XM_021613955.2 mRNA downstream 97223 78894771 ~ 78902977 (+) False LOC110530707
TU851066 other upstream 551527 78244210 ~ 78245615 (+) True G749663
TU850834 other upstream 909786 77884237 ~ 77887356 (+) False LOC110530993
TU850461 other upstream 1414531 77353637 ~ 77382611 (+) False G749137
TU850462 other upstream 1441118 77302737 ~ 77356024 (+) False G749137
TU850453 other upstream 1441118 77353637 ~ 77356024 (+) False G749137
TU852454 other downstream 181682 78979230 ~ 78979981 (+) True G750854
TU852557 other downstream 397722 79195270 ~ 79197378 (+) True G750935
TU852564 other downstream 547889 79345437 ~ 79347448 (+) True ncana
TU852726 other downstream 750949 79548497 ~ 79569877 (+) True LOC110530726
TU854284 other downstream 1833762 80631310 ~ 80634052 (+) True G752357

Expression Profile