RNA id: TU852350



Basic Information


Item Value
RNA id TU852350
length 215
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G750770
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 78932262 ~ 78932476 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GTATTATTAATcacttaaacatatttaataatgaTCTCTTACCTAGTTTGATGAATGTGGGCATTTTTGCTTACTTTTTGTTCTAAATATAGACAGCATATTGGATTGTGTTAAATTTCAGGAAATGCGCTTTAGATGCCCAAAAAAGTTCTGGGGGAGAACACCTAGACCCCCCTGCCAGGTTAtgcattttttccccctcaacaaTCTGAGAT

Function


GO: NA

KEGG: NA

JBrowse2


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Neighbor


RNA id RNA type direction distance location representative gene id
TU852339 lncRNA upstream 8738 78923294 ~ 78923524 (+) True G750759
TU852318 lncRNA upstream 39140 78892853 ~ 78893122 (+) True G750741
TU852306 lncRNA upstream 58918 78872966 ~ 78873344 (+) True G750731
TU852058 lncRNA upstream 146344 78785677 ~ 78785918 (+) True G750525
TU852056 lncRNA upstream 151246 78780765 ~ 78781016 (+) True G750523
TU852440 lncRNA downstream 30870 78963346 ~ 78963575 (+) True G750840
TU852443 lncRNA downstream 34282 78966758 ~ 78967066 (+) True G750843
TU852496 lncRNA downstream 185279 79117755 ~ 79121181 (+) True G750892
TU852541 lncRNA downstream 235658 79168134 ~ 79169700 (+) False G750923
TU852543 lncRNA downstream 235658 79168134 ~ 79170910 (+) True G750923
XM_021613956.2 mRNA upstream 29285 78894591 ~ 78902977 (+) False LOC110530707
XM_021613959.2 mRNA upstream 29285 78894604 ~ 78902977 (+) False LOC110530707
XM_021613955.2 mRNA upstream 29285 78894771 ~ 78902977 (+) False LOC110530707
XM_021613957.2 mRNA upstream 29285 78894781 ~ 78902977 (+) True LOC110530707
XM_036986367.1 mRNA upstream 70353 78830685 ~ 78861909 (+) True LOC110530706
XM_036986371.1 mRNA downstream 6704 78939180 ~ 78952258 (+) True LOC110530709
XM_036986372.1 mRNA downstream 23759 78956235 ~ 78959026 (+) True LOC110531004
XM_021613961.2 mRNA downstream 54739 78987215 ~ 78990699 (+) False LOC110530711
XM_021613963.2 mRNA downstream 54739 78987215 ~ 78990699 (+) False LOC110530711
XM_021613966.2 mRNA downstream 54739 78987215 ~ 78990699 (+) False LOC110530711
TU852066 other upstream 134714 78797142 ~ 78797548 (+) True G750533
TU851066 other upstream 686647 78244210 ~ 78245615 (+) True G749663
TU850834 other upstream 1044906 77884237 ~ 77887356 (+) False LOC110530993
TU850461 other upstream 1549651 77353637 ~ 77382611 (+) False G749137
TU850453 other upstream 1576238 77353637 ~ 77356024 (+) False G749137
TU852454 other downstream 46754 78979230 ~ 78979981 (+) True G750854
TU852557 other downstream 262794 79195270 ~ 79197378 (+) True G750935
TU852564 other downstream 412961 79345437 ~ 79347448 (+) True ncana
TU852726 other downstream 616021 79548497 ~ 79569877 (+) True LOC110530726
TU854284 other downstream 1698834 80631310 ~ 80634052 (+) True G752357

Expression Profile


TU852350 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 1.25.
End of interactive chart.

TU852350 Expression in each Bioproject

Bar chart with 2 bars.
TU852350 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 8.
End of interactive chart.