RNA id: TU852557


Basic Information

Item Value
RNA id TU852557
length 1402
RNA type TUCP
GC content 0.45
exon number 3
gene id G750935
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 79195270 ~ 79197378 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttatattattatttgctatcatttacacttttgttacaatgtatattgcatacattgttgctttggcaatattgacacaatgtttttcatgccaataaagcagcttgaatttgaatttgaatttgagagagagagagagagacagagagagagagagacagagagaatgggtacagagcagagtgagcaggagagggagagagagatagagagagagagagacagcgagagagagacagagagaatgggtacagagcagagagagaaagagagagagagagagagtgggtacagagcagagtgagcaggggagagagagagagagagaaagagagagagagaaagagagagagagaaagagagagagagagagaaagagagagagagagagagagagagagagagagagagagagagagagagagagagagagaaagagagagagagagagagaaagagagagagagaaagggagagagagagaaagagagagaaagagagaaagagagggagagagggagagagaatgggtacagagcaggggagagagagagaaagagagagggagagagatcatttacaattttgttacaatgtatattgtatacattgttgctttggcaatattgacacaatgtttttcatgccaataaagcagcttgaatttgaatttgaatttgagagagagagagaatgggtacagagcagagtgagcaggggagggagagagagagagagagagagagagagagagagagaatgggtacaGAGCAGAGTGagcatgggagggagagagagagagagagagagagagagagagagagagagagagagtgggtacagagcagagtgagcaggggagagagacagagagagaaagagagagagagaaagagagagagagaaagagagagagagagagagaaagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagaaagagagagagagagaaagagagagagagaaagggagagagagagaaagagagagaaagagagaaagagagggagagagggagagagaatgggtacagagcaggggagagagagagaaagagagagggagagagatcatttacaattttgttacaatgtatattgtatacattgttgctttggcaatattgacacaatgtttttcatgccaataaagcagcttgaatttgaatttgaatttgagagagagagagaatgggtacagagcagagtgagcaggggagggagagagagagagagagagagagagagagagagagagaatgggtacaGAGCAGAGTGagcatgggagggagagagagagagagagagagagagagagagagagagagagagagagaatgggtac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU852554 lncRNA upstream 8271 79186173 ~ 79186999 (+) True G750933
TU852543 lncRNA upstream 24360 79168134 ~ 79170910 (+) True G750923
TU852541 lncRNA upstream 25570 79168134 ~ 79169700 (+) False G750923
TU852496 lncRNA upstream 74089 79117755 ~ 79121181 (+) True G750892
TU852443 lncRNA upstream 228204 78966758 ~ 78967066 (+) True G750843
TU852586 lncRNA downstream 40610 79237988 ~ 79246034 (+) False G750957
TU852588 lncRNA downstream 40610 79237988 ~ 79239101 (+) True G750957
TU852646 lncRNA downstream 135548 79332926 ~ 79334733 (+) True G751001
TU852655 lncRNA downstream 153503 79350881 ~ 79351898 (+) True G751008
TU852660 lncRNA downstream 170876 79368254 ~ 79375494 (+) False G751011
XM_036986388.1 mRNA upstream 102014 79066751 ~ 79093256 (+) True slc25a42
XM_036986387.1 mRNA upstream 129049 79060595 ~ 79066221 (+) False armc6
XM_036986386.1 mRNA upstream 129049 79062248 ~ 79066221 (+) False armc6
XM_021613970.2 mRNA upstream 129049 79062300 ~ 79066221 (+) True armc6
XR_002474582.2 mRNA upstream 203126 78987215 ~ 78992144 (+) False LOC110530711
XM_036986389.1 mRNA downstream 13349 79210727 ~ 79347454 (+) False ncana
XM_036986391.1 mRNA downstream 13349 79210727 ~ 79347454 (+) False ncana
XM_036986401.1 mRNA downstream 190218 79387596 ~ 79508009 (+) False LOC110530721
XM_036986399.1 mRNA downstream 193075 79390453 ~ 79508009 (+) False LOC110530721
XM_036986403.1 mRNA downstream 193075 79390453 ~ 79508009 (+) False LOC110530721
TU852454 other upstream 215289 78979230 ~ 78979981 (+) True G750854
TU852066 other upstream 397722 78797142 ~ 78797548 (+) True G750533
TU851066 other upstream 949655 78244210 ~ 78245615 (+) True G749663
TU850834 other upstream 1307914 77884237 ~ 77887356 (+) False LOC110530993
TU850461 other upstream 1812659 77353637 ~ 77382611 (+) False G749137
TU852564 other downstream 148059 79345437 ~ 79347448 (+) True ncana
TU852726 other downstream 351119 79548497 ~ 79569877 (+) True LOC110530726
TU854284 other downstream 1433932 80631310 ~ 80634052 (+) True G752357
TU854325 other downstream 1544226 80741604 ~ 80741945 (+) True G752398
TU855294 other downstream 2289442 81486820 ~ 81487610 (+) True G753205

Expression Profile