RNA id: TU852661


Basic Information

Item Value
RNA id TU852661
length 1482
lncRNA type inter_gene
GC content 0.44
exon number 3
gene id G751011
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 79368254 ~ 79375494 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtcaGATCGAggaaaagacaaacacacacacactctcttgctGCACGCGCTAACCACACATACACTCCTATATCTAAGGGCAGAGCACCCAGACGCTGTGGCACCATGTTGCACCCCATCATGATAGGCATCGTGACCTTCAACACCTCCTTGACCATCATCTACTGGACCTTTCTCCTGGGAGGGACCTTCTTTGACATGATGTCTCAAGAAGAAGACAAGCCCAAGAAGCTTAGTGAGGTCACCCCCGCTTGAGCCTGCGCCGCCATGGAACCCACTACCTACCTGTGAATTTACTATGACAACCACCGACAGCTTACTAGGCCTATAGGCAGCTTGTGTCGCATTACACattttatgttttgttttttgttttttcagAATTCCATTGggaatcctgtttttgctttctctTTCTGCCGTTTTCCACTTGTTCCACATCCGTAGAGAACCGGGTCATCTGGATCAATCTGGAATCATTCTaaaacagattGGGTTCTTGGCCCAAAACCCTCTGATGTGGATGCTGAGGGCGgtatggaggaagaagaggaggagcgaGGGATCCTATATGATGGAAGGATTAAGAAAGAGTGGATGGAGGAGAACGAGGTTGGGTTGCTGCCAGGGTTCTACCACGTGGCAGGGAACTACCACCCGCCTGCCCTGCCACTTCGCAGCGTTATCACAGCTTTGCCAAGTGAGATGATTATGTCCAATCAGAATGTGACCTTTCAGCGCCCTTTGACCCCTCATGTCACCTCCTTCGGAGTTCTGTAACCTCATTTGTTATGCCAATACGAAATCACCCCCTCATCTCTAGCCCTATGGAAAGTGTTTATATCTGAGAGGATTTTAAGATACAAGCCATATGGCTGAAATTTCATCTGGCCTATGAGAGGACAAAATCATCTGCTTGTAACTAACCAATACATTAAGATCTAGGCAGAAGAGTTCAATCTGGAATAGGGCAGTGTTTTTTGGCCTACATGCCAGGTTCAGTAACGAAGTCCATCCTTCATTTTTACCCCATAACAACTCCTCTGTTTGTTGCAAATGACATAGAGATAGATGCTTGAGCTACATAACCACCGAGGTACAACACATGTAGCTTCTATGAAATATAACTGTGATACATGTATGAATACATTAGTATGTTCTTGTATTGATGCTGATAGAAAGGTGGGCCATATTTATACTCATTGACATGAGAAATGGGTAAAAAAAACTATAGAGCTCTTGGATGTGATGTATAGCAGCTATATTACTTCatgtgtagacacacacacacacacacacacacgcacatacgcgcacacacgcgtacacacgcgcacacacgcacacacttatatacacacacatatacacacacacaggttccagGTTTATGTGTTAGCAACAGTGTTTTCCCATTACGTAATAACTTGTGTTACTGTAATGTGTTTTTGAAATAAACATACTTTTACATTCCTGTTATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU852655 lncRNA upstream 16356 79350881 ~ 79351898 (+) True G751008
TU852646 lncRNA upstream 33521 79332926 ~ 79334733 (+) True G751001
TU852586 lncRNA upstream 122220 79237988 ~ 79246034 (+) False G750957
TU852588 lncRNA upstream 129153 79237988 ~ 79239101 (+) True G750957
TU852554 lncRNA upstream 181255 79186173 ~ 79186999 (+) True G750933
TU852666 lncRNA downstream 117 79375611 ~ 79376528 (+) True G751015
TU852668 lncRNA downstream 2604 79378098 ~ 79378341 (+) True G751016
TU852683 lncRNA downstream 26764 79402258 ~ 79404052 (+) True G751030
TU852637 lncRNA downstream 132891 79508385 ~ 79510833 (+) True G750993
TU852731 lncRNA downstream 140258 79515752 ~ 79519065 (+) True G751078
XM_036986389.1 mRNA upstream 20800 79210727 ~ 79347454 (+) False ncana
XM_036986391.1 mRNA upstream 20800 79210727 ~ 79347454 (+) False ncana
XM_036986388.1 mRNA upstream 274998 79066751 ~ 79093256 (+) True slc25a42
XM_036986386.1 mRNA upstream 302033 79062248 ~ 79066221 (+) False armc6
XM_036986401.1 mRNA downstream 12102 79387596 ~ 79508009 (+) False LOC110530721
XM_036986399.1 mRNA downstream 14959 79390453 ~ 79508009 (+) False LOC110530721
XM_036986403.1 mRNA downstream 14959 79390453 ~ 79508009 (+) False LOC110530721
XM_036986393.1 mRNA downstream 71610 79447104 ~ 79508009 (+) False LOC110530721
XM_036986394.1 mRNA downstream 71610 79447104 ~ 79508009 (+) False LOC110530721
TU852564 other upstream 20806 79345437 ~ 79347448 (+) True ncana
TU852557 other upstream 170876 79195270 ~ 79197378 (+) True G750935
TU852454 other upstream 388273 78979230 ~ 78979981 (+) True G750854
TU852066 other upstream 570706 78797142 ~ 78797548 (+) True G750533
TU851066 other upstream 1122639 78244210 ~ 78245615 (+) True G749663
TU852726 other downstream 173003 79548497 ~ 79569877 (+) True LOC110530726
TU854284 other downstream 1255816 80631310 ~ 80634052 (+) True G752357
TU854325 other downstream 1366110 80741604 ~ 80741945 (+) True G752398
TU855294 other downstream 2111326 81486820 ~ 81487610 (+) True G753205
TU855521 other downstream 2407855 81783349 ~ 81802285 (+) True sdhc

Expression Profile