RNA id: TU852731



Basic Information


Item Value
RNA id TU852731
length 240
lncRNA type intronic
GC content 0.50
exon number 2
gene id G751078
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 79515752 ~ 79519065 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


aaacagagaacatccctggtcatccctactgcctctgatctggaggactcactaaacagagagcatccctggtcatccctactgcctctgatctggtggactctctaaacagagaacatccctggtcatccctactgcctctgatctggtggactctctaaacagagagcatccctggtcatccctactgcctctgatctggcggactctcTAAACACATGTGTTTCGTTTGTATATGAG

Function


GO: NA

KEGG:

id description

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU852637 lncRNA upstream 4919 79508385 ~ 79510833 (+) True G750993
TU852683 lncRNA upstream 111700 79402258 ~ 79404052 (+) True G751030
TU852668 lncRNA upstream 137411 79378098 ~ 79378341 (+) True G751016
TU852666 lncRNA upstream 139224 79375611 ~ 79376528 (+) True G751015
TU852661 lncRNA upstream 140258 79368254 ~ 79375494 (+) False G751011
TU852743 lncRNA downstream 10023 79529088 ~ 79529306 (+) True G751089
TU852744 lncRNA downstream 10676 79529741 ~ 79531150 (+) True G751090
TU852762 lncRNA downstream 58541 79577606 ~ 79577817 (+) True G751108
TU852764 lncRNA downstream 84693 79603758 ~ 79604084 (+) True G751110
TU852765 lncRNA downstream 85851 79604916 ~ 79606547 (+) True G751111
XM_036986397.1 mRNA upstream 7743 79447104 ~ 79508009 (+) False LOC110530721
XM_036986406.1 mRNA downstream 29062 79548127 ~ 79579010 (+) False LOC110530726
XM_021613979.2 mRNA downstream 68275 79587340 ~ 79596019 (+) False LOC110530727
XM_036986408.1 mRNA downstream 70308 79589373 ~ 79596019 (+) False LOC110530727
XM_036986409.1 mRNA downstream 70954 79590019 ~ 79596019 (+) False LOC110530727
XM_036986410.1 mRNA downstream 71549 79590614 ~ 79596019 (+) False LOC110530727
TU852564 other upstream 168304 79345437 ~ 79347448 (+) True ncana
TU852557 other upstream 318374 79195270 ~ 79197378 (+) True G750935
TU852454 other upstream 535771 78979230 ~ 78979981 (+) True G750854
TU852066 other upstream 718204 78797142 ~ 78797548 (+) True G750533
TU851066 other upstream 1270137 78244210 ~ 78245615 (+) True G749663
TU852726 other downstream 29432 79548497 ~ 79569877 (+) True LOC110530726
TU854284 other downstream 1112245 80631310 ~ 80634052 (+) True G752357
TU854325 other downstream 1222539 80741604 ~ 80741945 (+) True G752398
TU855294 other downstream 1967755 81486820 ~ 81487610 (+) True G753205
TU855521 other downstream 2264284 81783349 ~ 81802285 (+) True sdhc

Expression Profile