RNA id: TU852764


Basic Information

Item Value
RNA id TU852764
length 327
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G751110
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 79603758 ~ 79604084 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATGAAGTGTGCGACTCTTTATTTTTATAGCTTagtttattcgccgttagtcagcacctctacataaAATGATTTTCTCTGGGTGTGCACCTGCTCATGTTTTTATATGTCATGACTTTAACACATGATGCACTGACGTCTGATTTTGTTGTGAAATGTGTTATGCCATAGAGATAGCTTGAGAGACAAAATAATAAGAAAATGGACTGCTTTAAAATGTAGCTGCTGTCACATATAATGGAACAGATACATGCATGAGTCCTCTATCTAAATCTATGAGTtatgagtcctctatctaactctatgaGTTATGCACATCTGTCCCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU852762 lncRNA upstream 25941 79577606 ~ 79577817 (+) True G751108
TU852744 lncRNA upstream 72608 79529741 ~ 79531150 (+) True G751090
TU852743 lncRNA upstream 74452 79529088 ~ 79529306 (+) True G751089
TU852731 lncRNA upstream 84693 79515752 ~ 79519065 (+) True G751078
TU852637 lncRNA upstream 92925 79508385 ~ 79510833 (+) True G750993
TU852765 lncRNA downstream 832 79604916 ~ 79606547 (+) True G751111
TU852774 lncRNA downstream 22538 79626622 ~ 79627210 (+) True G751119
TU852775 lncRNA downstream 25904 79629988 ~ 79630549 (+) True G751120
TU852776 lncRNA downstream 35595 79639679 ~ 79640870 (+) True G751121
TU852777 lncRNA downstream 35837 79639921 ~ 79640591 (+) True G751122
XM_021613979.2 mRNA upstream 7739 79587340 ~ 79596019 (+) False LOC110530727
XM_036986408.1 mRNA upstream 7739 79589373 ~ 79596019 (+) False LOC110530727
XM_036986409.1 mRNA upstream 7739 79590019 ~ 79596019 (+) False LOC110530727
XM_036986410.1 mRNA upstream 7739 79590614 ~ 79596019 (+) False LOC110530727
XM_036986411.1 mRNA upstream 7739 79590631 ~ 79596019 (+) False LOC110530727
XM_036986415.1 mRNA downstream 85183 79689267 ~ 79713549 (+) False LOC110530686
XM_036986418.1 mRNA downstream 85183 79689267 ~ 79713549 (+) False LOC110530686
XM_036986417.1 mRNA downstream 88559 79692643 ~ 79713549 (+) True LOC110530686
XM_021613989.2 mRNA downstream 429540 80033624 ~ 80036953 (+) False LOC110530734
XM_021613987.2 mRNA downstream 429588 80033672 ~ 80036953 (+) False LOC110530734
TU852726 other upstream 33881 79548497 ~ 79569877 (+) True LOC110530726
TU852564 other upstream 256310 79345437 ~ 79347448 (+) True ncana
TU852557 other upstream 406380 79195270 ~ 79197378 (+) True G750935
TU852454 other upstream 623777 78979230 ~ 78979981 (+) True G750854
TU852066 other upstream 806210 78797142 ~ 78797548 (+) True G750533
TU854284 other downstream 1027226 80631310 ~ 80634052 (+) True G752357
TU854325 other downstream 1137520 80741604 ~ 80741945 (+) True G752398
TU855294 other downstream 1882736 81486820 ~ 81487610 (+) True G753205
TU855521 other downstream 2179265 81783349 ~ 81802285 (+) True sdhc
TU855496 other downstream 2318078 81922162 ~ 81926159 (+) False G753337

Expression Profile