RNA id: TU852776


Basic Information

Item Value
RNA id TU852776
length 490
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G751121
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 79639679 ~ 79640870 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgtagcctAAAGTACATGTGTGCAtgcatcttctctctctctgcccgtcaTTTCATctcgtttcctctctctctctctctgtctgactgtaaTTTAatcttatcccctctctctctctctctgtctgactgtaaTTTAatcttatcccctctctctctctctctgtctgactgtaaTTTAattttatcccctctctctctctctctctctctctctgtctgactgtaattgaatcttatcctctctctctctctctctctctctctctgactgtaatTTCAttgtatcccctctctctctctctgaccatcaTTTCATCTCGTTTTCTCTCTTCCAACAGTACTCACTGGATGTGCTGTGTGAGACATTAGTGGGTTCTCCAGGCTCTAGGAAGGTGTTGACTGATGACACTCCTACAATGTATGTGGAGCAGGGTTGTAGATTACTGACGTCCATGAACGTGGTGGTGGTGTTCTTCAGTACAGGCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU852775 lncRNA upstream 9130 79629988 ~ 79630549 (+) True G751120
TU852774 lncRNA upstream 12469 79626622 ~ 79627210 (+) True G751119
TU852765 lncRNA upstream 33132 79604916 ~ 79606547 (+) True G751111
TU852764 lncRNA upstream 35595 79603758 ~ 79604084 (+) True G751110
TU852762 lncRNA upstream 61862 79577606 ~ 79577817 (+) True G751108
TU852810 lncRNA downstream 25667 79666537 ~ 79667411 (+) True G751145
TU852824 lncRNA downstream 70695 79711565 ~ 79712188 (+) True G751159
TU852791 lncRNA downstream 73746 79714616 ~ 79716693 (+) True G751127
TU852834 lncRNA downstream 82269 79723139 ~ 79723645 (+) True G751165
TU852884 lncRNA downstream 157108 79797978 ~ 79801420 (+) True G751197
XM_036986408.1 mRNA upstream 43660 79589373 ~ 79596019 (+) False LOC110530727
XM_036986415.1 mRNA downstream 48397 79689267 ~ 79713549 (+) False LOC110530686
XM_036986418.1 mRNA downstream 48397 79689267 ~ 79713549 (+) False LOC110530686
XM_036986417.1 mRNA downstream 51773 79692643 ~ 79713549 (+) True LOC110530686
XM_021613989.2 mRNA downstream 392754 80033624 ~ 80036953 (+) False LOC110530734
XM_021613987.2 mRNA downstream 392802 80033672 ~ 80036953 (+) False LOC110530734
TU852726 other upstream 69802 79548497 ~ 79569877 (+) True LOC110530726
TU852564 other upstream 292231 79345437 ~ 79347448 (+) True ncana
TU852557 other upstream 442301 79195270 ~ 79197378 (+) True G750935
TU852454 other upstream 659698 78979230 ~ 78979981 (+) True G750854
TU852066 other upstream 842131 78797142 ~ 78797548 (+) True G750533
TU854284 other downstream 990440 80631310 ~ 80634052 (+) True G752357
TU854325 other downstream 1100734 80741604 ~ 80741945 (+) True G752398
TU855294 other downstream 1845950 81486820 ~ 81487610 (+) True G753205
TU855521 other downstream 2142479 81783349 ~ 81802285 (+) True sdhc
TU855496 other downstream 2281292 81922162 ~ 81926159 (+) False G753337

Expression Profile