RNA id: TU852791


Basic Information

Item Value
RNA id TU852791
length 1775
lncRNA type antisense_over
GC content 0.43
exon number 3
gene id G751127
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 79714616 ~ 79716693 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCATCTGTCGGCCCTGGAAGTATGCTTACATCTTATTCCTAAAGTTCTTGAATGATACATCTCAAACTTCAGACCTTTTAGTGCGTACTAACTACAGTCCTATGCATAGTAGTATATCCTATCAGATCACACTAGTTCAGTCAAGGGTCAGAGGCTTTTATTTACATACCACCGCAGAGAACACACTTCCATTTCTCTTAGTCACTTCTTAAAACAAGTTTTTATAAAAGCTAAATACAAGAACCACCATCTTATTTCATATCAACAGAAAATCATGACTAGACATACAATATAACAAATACATTATTAGTTTggacttattttaaaattgatgaACAAAGCCTAAAACTCAAGCCTGCATCTTGATAAGTGTCTGGTGCCAACATTAGATACAGAAACTAAACATGGCCCTCAATACAGGTTCATAAATGTGATGTCGAGCTTTTTCTAAGATTTCATTGTGCATAAGAATCCCTTTTAAATGGTCAAAGACTGCCATCTAGGTAACAACCAGTAACATTGCAGAACTAAGTAAAGCTATACAAGTGATTGTTGCTTACAACTTAACTGTACGCTGCTGCATCTGGCCAAGCCAAAAAGTAGATCTGTAATTCCCTTCCATGTCGATGTAAAACCAGTATTTTATTTTTCCATTTGTAAGCAAGCCAATGCAAGAAATAGCATATCTGCCCGAAGATAGCATTTTGCACTAAACACGACAACGTACAAGTCCCCCcccaaaagtatatatatttttttacaaagccAGATAGGTAAACTTGCACAGTAGCGTTAGACATCGGAAAGTTCCACATTAGGGGTATACTAGTAGTATTGACAACAGCTAATTGATCAACGCAACAGATTCAACTCGATAGTTGATATCCCACACTGATCACCTGATGTAATGAACCACACAGTCAGCAGTTTAGATCACAACATTGGTTTCTTCTCAAATAATAGCAGCATGGTAACAAGTTGTAACAAAACACACTGACTGTGCATTTTGTTTCTGGAATGATGTCACATAACTTTGACCCCGAAATGGAGAGGACCCACGTGGGTTTCTGTATTGATAAAGCTCTTGTGGAAACTGGATAACTCAAGGCACCATATGAAACAATGCACTATAGCAAAACATCTCCAGTTGGTGTACTTCCCCCATTGTATCCCACCCCCCAGACACACCTGTTGAACCACTAAGTACAGGATGCAGTTGCCAGAGTGAGAGTTGTTCCCAGAAGCAGTGATGTGAGGGGAGCCCAGCATGAAATCAAACCTTGATACAACCACTCGGACTTCACTCCAGAGGGATAAACCGTCCTGTTGGTTGCAACTGGTGAGGGAGTGTAGGGTGCATCCAGGTTGTGTATTATAGGTTATTCATGTCCACTGTGTGTGTACTAGGGGTTGGGTTGAGTGTGTGTCGGTACGgtcagcagaggaggagaggaaggacaggttgtgtgtgtgtactagggGTTTAGTTGagtgtgtgtccagagtgtgaCGGTACGGTcagcggaggaggagaggaaggacaggtcgtgtgtgtgtgtgttaggggttGTGTGTCCAGAGTGTGACGGTACGgtcagcagaggaggagaggaaggacaggttgtgtgtgtgttaggggttGTGTGTCCAGAGTGTGACGGTACGGTcagcggaggaggagaggaaggacaggTCGTGCGTGTGCCACCTGCACTGAATCACCTTGTCACCGTGCTCCCCTACCAGAGTCAGGGGCAACGGCTTCGTCAAGTCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU852824 lncRNA upstream 2428 79711565 ~ 79712188 (+) True G751159
TU852810 lncRNA upstream 47205 79666537 ~ 79667411 (+) True G751145
TU852776 lncRNA upstream 73746 79639679 ~ 79640870 (+) True G751121
TU852777 lncRNA upstream 74025 79639921 ~ 79640591 (+) True G751122
TU852775 lncRNA upstream 84067 79629988 ~ 79630549 (+) True G751120
TU852834 lncRNA downstream 6446 79723139 ~ 79723645 (+) True G751165
TU852884 lncRNA downstream 81285 79797978 ~ 79801420 (+) True G751197
TU852892 lncRNA downstream 91762 79808455 ~ 79809598 (+) False G751202
TU852898 lncRNA downstream 91762 79808455 ~ 79809598 (+) False G751202
TU852893 lncRNA downstream 92102 79808795 ~ 79810491 (+) False G751202
XM_036986415.1 mRNA upstream 1067 79689267 ~ 79713549 (+) False LOC110530686
XM_036986418.1 mRNA upstream 1067 79689267 ~ 79713549 (+) False LOC110530686
XM_036986417.1 mRNA upstream 1067 79692643 ~ 79713549 (+) True LOC110530686
XM_036986408.1 mRNA upstream 118597 79589373 ~ 79596019 (+) False LOC110530727
XM_021613989.2 mRNA downstream 316931 80033624 ~ 80036953 (+) False LOC110530734
XM_021613987.2 mRNA downstream 316979 80033672 ~ 80036953 (+) False LOC110530734
XM_036986426.1 mRNA downstream 318012 80034705 ~ 80036953 (+) True LOC110530734
XM_021613991.2 mRNA downstream 354870 80071563 ~ 80074533 (+) False LOC110530735
XM_036986427.1 mRNA downstream 595832 80312525 ~ 80327493 (+) False acsm3
TU852726 other upstream 144739 79548497 ~ 79569877 (+) True LOC110530726
TU852564 other upstream 367168 79345437 ~ 79347448 (+) True ncana
TU852557 other upstream 517238 79195270 ~ 79197378 (+) True G750935
TU852454 other upstream 734635 78979230 ~ 78979981 (+) True G750854
TU852066 other upstream 917068 78797142 ~ 78797548 (+) True G750533
TU854284 other downstream 914617 80631310 ~ 80634052 (+) True G752357
TU854325 other downstream 1024911 80741604 ~ 80741945 (+) True G752398
TU855294 other downstream 1770127 81486820 ~ 81487610 (+) True G753205
TU855521 other downstream 2066656 81783349 ~ 81802285 (+) True sdhc
TU855496 other downstream 2205469 81922162 ~ 81926159 (+) False G753337

Expression Profile